RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TMCC3Q9ULS5 477 aa5.32□□□□□ -1.56
RTF1-204ENST00000558117 CORO1CQ9ULV4 474 aaPredicted RBP5.32□□□□□ -1.56
RTF1-204ENST00000558117 ERVW-1Q9UQF0 538 aa5.32□□□□□ -1.56
RTF1-204ENST00000558117 NME7Q9Y5B8 376 aa5.32□□□□□ -1.56
RTF1-204ENST00000558117 CLIC4Q9Y696 253 aa5.32□□□□□ -1.56
RTF1-204ENST00000558117 SLC16A4O15374 487 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 SPINT2O43291 252 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 ZBTB43O43298 467 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 MED24O75448 989 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 PAK4O96013 591 aaPredicted RBP5.31□□□□□ -1.56
RTF1-204ENST00000558117 ALPIP09923 528 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 MYOD1P15172 320 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 GCFC2P16383 781 aaKnown RBP5.31□□□□□ -1.56
RTF1-204ENST00000558117 ITGA2P17301 1181 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 ATP5DP30049 168 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 MATR3P43243 847 aaKnown RBP eCLIP5.31□□□□□ -1.56
RTF1-204ENST00000558117 MSH2P43246 934 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 TDGF1P3P51864 188 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 SMSP52788 366 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 ISL1P61371 349 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 RAPSNQ13702 412 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 NR1D2Q14995 579 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 FAM46CQ5VWP2 391 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 CES4AQ5XG92 561 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 FRG2Q64ET8 278 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 CENPQQ7L2Z9 268 aaPredicted RBP5.31□□□□□ -1.56
RTF1-204ENST00000558117 SLFN11Q7Z7L1 901 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 EPHX4Q8IUS5 362 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 TEX9Q8N6V9 391 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 ACVR1CQ8NER5 493 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 OR5R1Q8NH85 324 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 BBS10Q8TAM1 723 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 SPAG5Q96R06 1193 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 RUFY1Q96T51 708 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 MYCBPQ99417 103 aaPredicted RBP5.31□□□□□ -1.56
RTF1-204ENST00000558117 SLC17A9Q9BYT1 436 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 RABEP2Q9H5N1 569 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 OR14J1Q9UGF5 321 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 KCNN3Q9UGI6 736 aa5.31□□□□□ -1.56
RTF1-204ENST00000558117 LIPT2A6NK58 231 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 C21orf140B9A014 251 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 M0QZ24 198 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 FPGTO14772 594 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 ADAM20O43506 726 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 CTAG2O75638 210 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 GOSR1O95249 250 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 SRPRAP08240 638 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 HMBSP08397 361 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 PLA2G4BP0C869 781 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 CDH1P12830 882 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 WARSP23381 471 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 MCM3P25205 808 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 ALDH4A1P30038 563 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 ATP6V1E1P36543 226 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 APOBEC1P41238 236 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 TSFMP43897 325 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 SGSHP51688 502 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 RAD23AP54725 363 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 RPS18P62269 152 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 DECR1Q16698 335 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 ZNF628Q5EBL2 1059 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 C10orf120Q5SQS8 335 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 DCST1Q5T197 706 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 NKAIN2Q5VXU1 208 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 BRAT1Q6PJG6 821 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 GKN2Q86XP6 184 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 RNF113BQ8IZP6 322 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 SCML4Q8N228 414 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 WDTC1Q8N5D0 677 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 LRRC52Q8N7C0 313 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 LMNTD1Q8N9Z9 388 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 TMEM161BQ8NDZ6 487 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 Q8NFD4 153 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 CT55Q8WUE5 264 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 ULBP3Q9BZM4 244 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 TUFT1Q9NNX1 390 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 POU2F3Q9UKI9 436 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 BTRCQ9Y297 605 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 R3HDM2Q9Y2K5 976 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 AMDHD2Q9Y303 409 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 CSAG2Q9Y5P2 127 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 INTS1Q8N201 2190 aaKnown RBP5.3□□□□□ -1.56
RTF1-204ENST00000558117 DOCK7Q96N67 2140 aa5.3□□□□□ -1.56
RTF1-204ENST00000558117 NYNRINQ9P2P1 1898 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 POLR1CO15160 346 aaPredicted RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 ZWINTO95229 277 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 BAG4O95429 457 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 TRIM49P0CI25 452 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 TRIM49CP0CI26 452 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 IFNAR1P17181 557 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 CA5AP35218 305 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 GNL1P36915 607 aaPredicted RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 GARSP41250 739 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 NDST2P52849 883 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 CLDN20P56880 219 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 RBP5P82980 135 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 COG7P83436 770 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 BMP2KLQ5H9B9 411 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 PLEKHS1Q5SXH7 462 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 GARNL3Q5VVW2 1013 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms