RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MS4A12Q9NXJ0 267 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ENTPD4Q9Y227 616 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ORC6Q9Y5N6 252 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ATG2BQ96BY7 2078 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 GSAPA4D1B5 854 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 OR6C74A6NCV1 312 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SCAMP1O15126 338 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 PDE9AO76083 593 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CSF2P04141 144 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ARAFP10398 606 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 NME1P15531 152 aaKnown RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 JUNDP17535 347 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CD247P20963 164 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 RYKP34925 604 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 BUD31P41223 144 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 PPP5CP53041 499 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ARSFP54793 590 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ARPC4P59998 168 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 DSTNP60981 165 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 TFF2Q03403 129 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 RIPPLY1Q0D2K3 151 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 FZD5Q13467 585 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SCARB2Q14108 478 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 GNA13Q14344 377 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 KCNJ8Q15842 424 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ZNF181Q2M3W8 571 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SPDYE7PQ495Y7 208 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SAXO2Q658L1 398 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 FIGLAQ6QHK4 219 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ZNF551Q7Z340 670 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SPARTQ8N0X7 666 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CADM3Q8N126 398 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 NAGSQ8N159 534 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 C10orf111Q8N326 155 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 PJA1Q8NG27 643 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 FLVCR1-AS1Q8TAF5 88 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SLC37A2Q8TED4 501 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CLDN23Q96B33 292 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 TM4SF19Q96DZ7 209 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 NRTNQ99748 197 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 PRDM7Q9NQW5 492 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 C1GALT1Q9NS00 363 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 PNMA8BQ9ULN7 279 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CORINQ9Y5Q5 1042 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 FAM172BPA6NC97 362 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 UPK1AO00322 258 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 BCAS1O75363 584 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 JRKO75564 520 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SEMG1P04279 462 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 THRBP10828 461 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ITGA2P17301 1181 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 EEF1B2P24534 225 aaKnown RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 MVDP53602 400 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CDK6Q00534 326 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 HHEXQ03014 270 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SLAMF1Q13291 335 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 GAS6Q14393 721 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 NEDD8Q15843 81 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CRB2Q5IJ48 1285 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 OR2T5Q6IEZ7 315 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ISLR2Q6UXK2 745 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ARMC8Q8IUR7 673 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CLEC4FQ8N1N0 589 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 FAM86B1Q8N7N1 296 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ZNF555Q8NEP9 628 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 OR2T29Q8NH02 315 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 FAM110BQ8TC76 370 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ZDHHC1Q8WTX9 485 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SLC6A18Q96N87 628 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 BBS4Q96RK4 519 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SERINC2Q96SA4 455 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 DOHHQ9BU89 302 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 TPSD1Q9BZJ3 242 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 TPK1Q9H3S4 243 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 NTN4Q9HB63 628 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CCNB1IP1Q9NPC3 277 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 A4GALTQ9NPC4 353 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 TEX10Q9NXF1 929 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-229ENST00000557348 C3orf18Q9UK00 162 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 UTS2RQ9UKP6 389 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 PADI2Q9Y2J8 665 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 TESMINQ9Y4I5 508 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 ASB4Q9Y574 426 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 SPACA6W5XKT8 324 aa11.97□□□□□ -0.49
SHMT2-229ENST00000557348 CDH23Q9H251 3354 aa11.96□□□□□ -0.49
SHMT2-229ENST00000557348 PRAMEF33A0A0G2JMD5 474 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 OR5K3A6NET4 321 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 PTTG1O95997 202 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 IL9P15248 144 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 POLR2CP19387 275 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 EFNA1P20827 205 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 MAGP20916 626 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 TLX1P31314 330 aaPredicted RBP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 MPIP34949 423 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 OPRL1P41146 370 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 FASLGP48023 281 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 RAD23AP54725 363 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 ITGA1P56199 1179 aa11.96□□□□□ -0.5
SHMT2-229ENST00000557348 HNRNPKP61978 463 aaKnown RBP eCLIP11.96□□□□□ -0.5
SHMT2-229ENST00000557348 SKP1P63208 163 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms