RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 IKZF3Q9UKT9 509 aa9.27□□□□□ -0.93
SCFD1-220ENST00000556486 SNX12Q9UMY4 172 aa9.27□□□□□ -0.93
SCFD1-220ENST00000556486 SLC22A14Q9Y267 594 aa9.27□□□□□ -0.93
SCFD1-220ENST00000556486 NPFFR2Q9Y5X5 522 aa9.27□□□□□ -0.93
SCFD1-220ENST00000556486 EML6Q6ZMW3 1958 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 A0A0G2JMM0 328 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 A0A1W2PPB8 328 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 A0A1W2PRS3 328 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 LRIT2A6NDA9 550 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 A6NNC1 897 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 KIR3DP1A8MWS1 328 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TP73O15350 636 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 NRDCO43847 1150 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 BANF1O75531 89 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ITGA10O75578 1167 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 MYO1DO94832 1006 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 GUCA1CO95843 209 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TBX6O95947 436 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 SERPIND1P05546 499 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 GLI4P10075 376 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 HPDP32754 393 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 GGT5P36269 586 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ZFP36L2P47974 494 aaKnown RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 OCRLQ01968 901 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 CDKL4Q5MAI5 379 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TRMT10BQ6PF06 316 aaKnown RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TMIGD1Q6UXZ0 262 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 C16orf47Q6ZP98 133 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 RGS9BPQ6ZS82 235 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 SYDE1Q6ZW31 735 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ADAMTSL2Q86TH1 951 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ZC3HC1Q86WB0 502 aaKnown RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 KRTAP1-3Q8IUG1 177 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ZNF595Q8IYB9 648 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 CYP4Z2PQ8N1L4 340 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 SVIPQ8NHG7 77 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.26□□□□□ -0.932e-17■■■■□ 19.6
SCFD1-220ENST00000556486 MS4A6EQ96DS6 147 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 PDLIM2Q96JY6 352 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 QRFPRQ96P65 431 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TTYH2Q9BSA4 534 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 CNPPD1Q9BV87 410 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ZDHHC11Q9H8X9 412 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 POPDC3Q9HBV1 291 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TCF7L1Q9HCS4 588 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ADAP2Q9NPF8 381 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 DEPPQ9NTK1 212 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 TRMT1Q9NXH9 659 aaKnown RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ALKBH4Q9NXW9 302 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 MOCS1Q9NZB8 636 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 GPRC5BQ9NZH0 403 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 SLC17A6Q9P2U8 582 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ASIC3Q9UHC3 531 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 ADAM21Q9UKJ8 722 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 YARS2Q9Y2Z4 477 aaKnown RBP9.26□□□□□ -0.93
SCFD1-220ENST00000556486 OARD1Q9Y530 152 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 FAM215AQ9Y5M1 114 aa9.26□□□□□ -0.93
SCFD1-220ENST00000556486 A0A088AWK7 358 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 TRBV11-1A0A0K0K1C0 115 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 INAFM1C9JVW0 142 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 CDC7O00311 574 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 CYR61O00622 381 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 CLDN4O14493 209 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 ZFAND5O76080 213 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 SNUPNO95149 360 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 WISP3O95389 354 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 RAF1P04049 648 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 TUBB4AP04350 444 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 C1GALT1C1LP0DN25 315 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 ZNF10P21506 573 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 ACVR2AP27037 513 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 HNRNPH1P31943 449 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 HNF4AP41235 474 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 ELK3P41970 407 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 SSR4P51571 173 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 PGGT1BP53609 377 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 RAB38P57729 211 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 PLGLB1Q02325 96 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 RUNX2Q13950 521 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 E2F2Q14209 437 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 ELAVL1Q15717 326 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 RTL6Q6ICC9 239 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 TMEM156Q8N614 296 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 PSD4Q8NDX1 1056 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 OR2L5Q8NG80 312 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 OR8K3Q8NH51 312 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 RHBDF1Q96CC6 855 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 WDR34Q96EX3 536 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 CAPS2Q9BXY5 557 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 DDX47Q9H0S4 455 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 LIN28AQ9H9Z2 209 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 PPANQ9NQ55 473 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 KCMF1Q9P0J7 381 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 MYOTQ9UBF9 498 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 TMEFF2Q9UIK5 374 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 CBLCQ9ULV8 474 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 MRPS33Q9Y291 106 aaKnown RBP9.25□□□□□ -0.93
SCFD1-220ENST00000556486 PSAT1Q9Y617 370 aa9.25□□□□□ -0.93
SCFD1-220ENST00000556486 STAB1Q9NY15 2570 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms