RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CHP2O43745 196 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 STC2O76061 302 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 KLHL18O94889 574 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ANXA4P09525 319 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HSD3B1P14060 373 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SOAT1P35610 550 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC6A12P48065 614 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 EPHB3P54753 998 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GAS1P54826 345 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PTPN5P54829 565 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 IRF8Q02556 426 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ZMYND11Q15326 602 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TCEA2Q15560 299 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CRTC2Q53ET0 693 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CPTPQ5TA50 214 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 LCN1P1Q5VSP4 162 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ACSM5Q6NUN0 579 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF730Q6ZMV8 503 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TRILQ7L0X0 811 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC30A8Q8IWU4 369 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 NPAS3Q8IXF0 933 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GDPD1Q8N9F7 314 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 L3MBTL4Q8NA19 623 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 DUSP18Q8NEJ0 188 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 FAM46DQ8NEK8 389 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 BEST4Q8NFU0 473 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GPR32P1Q8NGA4 272 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 OR52I1Q8NGK6 324 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 C9orf43Q8TAL5 461 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 WDR20Q8TBZ3 569 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 KLHL6Q8WZ60 621 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 VOPP1Q96AW1 172 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 OR4K3Q96R72 315 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 KCNJ15Q99712 375 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 MS4A7Q9GZW8 240 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC28A3Q9HAS3 691 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HMX1Q9NP08 348 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CTPS2Q9NRF8 586 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CFAP97Q9P2B7 532 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 VPS29Q9UBQ0 182 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 RABL2BQ9UNT1 228 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PCDHB1Q9Y5F3 818 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 RPS10-NUDT3A0A1W2PQS6 291 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GSAPA4D1B5 854 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 BTN3A3O00478 584 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ARHGEF9O43307 516 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HRGP04196 525 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 RPLP2P05387 115 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SERPIND1P05546 499 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GALTP07902 379 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SELPP16109 830 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF8P17098 575 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CTRB1P17538 263 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PRPH2P23942 346 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HOXD10P28358 340 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SERPINA4P29622 427 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 BTCP35070 178 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PTGS2P35354 604 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC9A3P48764 834 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HMGA2P52926 109 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SRSF11Q05519 484 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PCDH1Q08174 1060 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 FGFBP1Q14512 234 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ATP13A5Q4VNC0 1218 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 DDI2Q5TDH0 399 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TIGD3Q6B0B8 471 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CTRB2Q6GPI1 263 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CMTM8Q8IZV2 173 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GHDCQ8N2G8 530 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PHF21AQ96BD5 680 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 MTERF3Q96E29 417 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TOE1Q96GM8 510 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 FCRL1Q96LA6 429 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC22A12Q96S37 553 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC35A5Q9BS91 424 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM43Q9BTV4 400 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 WRAP53Q9BUR4 548 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 DPCDQ9BVM2 203 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ACAT2Q9BWD1 397 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PRR14Q9BWN1 585 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SORBS1Q9BX66 1292 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 FAM120CQ9NX05 1096 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 B3GNT2Q9NY97 397 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SH2B3Q9UQQ2 575 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PRKAB1Q9Y478 270 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TRBV5-4A0A0C4DH59 114 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SH3D21A4FU49 640 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SYNDIG1LA6NDD5 238 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF840PA6NDX5 716 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 NPIPB15A6NHN6 443 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ATP6V1G2-DDX39BF2Z307 99 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 INMT-MINDY4F8WBC2 141 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 QSOX1O00391 747 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ADAMTS4O75173 837 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LGI1O95970 557 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 IGSF6O95976 241 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 IL1AP01583 271 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 HLA-DQB1P01920 261 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LRG1P02750 347 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms