RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 PRR35P0CG20 571 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 RPL38P63173 70 aaKnown RBP13.31□□□□□ -0.28
LIG1-203ENST00000536218 SCRN3Q0VDG4 424 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 MESP2Q0VG99 397 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 CAMK1Q14012 370 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 GLYR1Q49A26 553 aaPredicted RBP13.31□□□□□ -0.28
LIG1-203ENST00000536218 XKR7Q5GH72 579 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 LYPLAL1Q5VWZ2 237 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 C17orf107Q6ZR85 190 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 CBARPQ8N350 705 aaPredicted RBP13.31□□□□□ -0.28
LIG1-203ENST00000536218 Q8N402 240 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 SLC5A11Q8WWX8 675 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 ACTL8Q9H568 366 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 MAGIXQ9H6Y5 334 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 RBFOX1Q9NWB1 397 aaKnown RBP13.31□□□□□ -0.28
LIG1-203ENST00000536218 HPF1Q9NWY4 346 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 C1orf109Q9NX04 203 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 DUSP12Q9UNI6 340 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 NOTCH4Q99466 2003 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 ISM1B1AKI9 464 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 CFDP00746 253 aaPredicted RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 RETP07949 1114 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 EN2P19622 333 aaPredicted RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 CSTF3Q12996 717 aaKnown RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 CLLU1Q5K131 121 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 SPANXN4Q5MJ08 99 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 FAM92BQ6ZTR7 304 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 UBE2R2Q712K3 238 aaPredicted RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 ANKRD46Q86W74 232 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 ATCAYQ86WG3 371 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 OR11H4Q8NGC9 324 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 TMEM203Q969S6 136 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 CD244Q9BZW8 370 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 COMMD3Q9UBI1 195 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 LTBP2Q14767 1821 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 PRSS44E7EML9 344 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 LGALS8O00214 317 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 LYRM1O43325 122 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 OR56A5P0C7T3 313 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 POLR2LP62875 67 aaKnown RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 VLDLRP98155 873 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 DNAJC5GQ8N7S2 189 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 SRFBP1Q8NEF9 429 aaKnown RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 B3GNT7Q8NFL0 401 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 ARMC5Q96C12 935 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 LYSMD1Q96S90 227 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 RBCK1Q9BYM8 510 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 ATG10Q9H0Y0 220 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 MIXL1Q9H2W2 232 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 TMEM245Q9H330 911 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 SLC6A13Q9NSD5 602 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 KCTD5Q9NXV2 234 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 NEUROG3Q9Y4Z2 214 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 IRAK3Q9Y616 596 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 GBF1Q92538 1859 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 A0A1W2PPL8 197 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 LINC01553A4QN01 128 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 ARNTLO00327 626 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 KPNA3O00505 521 aaPredicted RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 IFNA14P01570 189 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 FABP3P05413 133 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 COL19A1Q14993 1142 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 ZNF77Q15935 545 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 LEXMQ3ZCV2 418 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 ZNF367Q7RTV3 350 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 C7orf61Q8IZ16 206 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 VPS37AQ8NEZ2 397 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 UFD1Q92890 307 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 TPD52L3Q96J77 140 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 RIOK2Q9BVS4 552 aaKnown RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 CPEB1Q9BZB8 566 aaKnown RBP13.3□□□□□ -0.28
LIG1-203ENST00000536218 SLC6A15Q9H2J7 730 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 PRELID3BQ9Y3B1 194 aa13.3□□□□□ -0.28
LIG1-203ENST00000536218 GMDSO60547 372 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 STK16O75716 305 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 EPB42P16452 691 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 DOC2BQ14184 412 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 UGT8Q16880 541 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.29□□□□□ -0.28
LIG1-203ENST00000536218 FRMPD2BQ6IN97 320 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 MSRB3Q8IXL7 192 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.29□□□□□ -0.28
LIG1-203ENST00000536218 FOXJ1Q92949 421 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 PTP4A1Q93096 173 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 CRELD1Q96HD1 420 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 HRASLS5Q96KN8 279 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 WRAP53Q9BUR4 548 aaKnown RBP13.29□□□□□ -0.28
LIG1-203ENST00000536218 PCDHGA9Q9Y5G4 932 aaKnown RBP13.29□□□□□ -0.28
LIG1-203ENST00000536218 ULK1O75385 1050 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 TOXO94900 526 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 CTSLP07711 333 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 ANXA5P08758 320 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 HLA-EP13747 358 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 HOXB3P14651 431 aaPredicted RBP13.29□□□□□ -0.28
LIG1-203ENST00000536218 RAB3AP20336 220 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 ITPKAP23677 461 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 PSMA1P25786 263 aaKnown RBP13.29□□□□□ -0.28
LIG1-203ENST00000536218 DGKEP52429 567 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 LBX1P52954 281 aa13.29□□□□□ -0.28
LIG1-203ENST00000536218 METAP1P53582 386 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms