RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ZBTB49Q6ZSB9 765 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 TMPRSS11FQ6ZWK6 438 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 PIWIL3Q7Z3Z3 882 aaKnown RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 KRTAP7-1Q8IUC3 87 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 MAP7D3Q8IWC1 876 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 GPATCH11Q8N954 259 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ADAD2Q8NCV1 583 aaKnown RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 MOSPD2Q8NHP6 518 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 PPP4R1Q8TF05 950 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ATL1Q8WXF7 558 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 TM9SF4Q92544 642 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 SLAMF9Q96A28 289 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 CCDC51Q96ER9 411 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 LINGO1Q96FE5 620 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 STAMBPL1Q96FJ0 436 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 C18orf12Q96KH6 178 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 SEPHS2Q99611 448 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 GABRG3Q99928 467 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 SMR3AQ99954 134 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 FERMT1Q9BQL6 677 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 FNDC11Q9BVV2 318 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 NACAP1Q9BZK3 213 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 TFB2MQ9H5Q4 396 aaKnown RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 MCCC2Q9HCC0 563 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 VAT1LQ9HCJ6 419 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 MYNNQ9NPC7 610 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 GDF3Q9NR23 364 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 DPP3Q9NY33 737 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 NPAP1Q9NZP6 1156 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 FBXL5Q9UKA1 691 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 GRIP1Q9Y3R0 1128 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 HES2Q9Y543 173 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 UBIAD1Q9Y5Z9 338 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 MGAM2Q2M2H8 2515 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 HYDINQ4G0P3 5121 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 POLEQ07864 2286 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 DIDO1Q9BTC0 2240 aaKnown RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 PRKDCP78527 4128 aaKnown RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 A4D1N5 150 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 HTR3EA5X5Y0 456 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 C5orf60A6NFR6 353 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 SMIM1B2RUZ4 78 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 K7EM74 188 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 PSMA7O14818 248 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 PRKNO60260 465 aaPredicted RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 SURF6O75683 361 aaKnown RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 CCNE2O96020 404 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 GBAP04062 536 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 FAM58BPP0C7Q3 252 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 PATE4P0C8F1 98 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 PDGFRAP16234 1089 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 MPZP25189 248 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 AZGP1P25311 298 aaKnown RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 CD82P27701 267 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 RPL24P83731 157 aaKnown RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 SCN1BQ07699 218 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 DRP2Q13474 957 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 PTK6Q13882 451 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 SLMAPQ14BN4 828 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 MEP1BQ16820 701 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 TYSND1Q2T9J0 566 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 PRR27Q6MZM9 219 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 DET1Q7L5Y6 550 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 OTOAQ7RTW8 1153 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 ABI3BPQ7Z7G0 1075 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 STPG4Q8N801 248 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 OCC1Q8TAD7 63 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 BIRC7Q96CA5 298 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 OTUB1Q96FW1 271 aaPredicted RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 CCDC114Q96M63 670 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 CPNE1Q99829 537 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 EGFL8Q99944 293 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 MLPHQ9BV36 600 aaPredicted RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 TRIM6Q9C030 488 aaPredicted RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 COPS7BQ9H9Q2 264 aaPredicted RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 ZNF624Q9P2J8 865 aaPredicted RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 RNF150Q9ULK6 438 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 NME7Q9Y5B8 376 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 HIVEP2P31629 2446 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 SVEP1Q4LDE5 3571 aa3.45□□□□□ -1.86
CD44-235ENST00000532339 ANK3Q12955 4377 aaKnown RBP3.45□□□□□ -1.86
CD44-235ENST00000532339 ARID2Q68CP9 1835 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 TDRD15B5MCY1 1934 aaKnown RBP3.44□□□□□ -1.86
CD44-235ENST00000532339 A0A0U1RQK1 487 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 ZCWPW2A0A1B0GU75 182 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 ZNF320A2RRD8 509 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 CLDN4O14493 209 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 MEIS2O14770 477 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 LRRTM2O43300 516 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 GPR137BO60478 399 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 CD22P20273 847 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 CHMLP26374 656 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 AXLP30530 894 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 KIF5BP33176 963 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 UGT1A5P35504 534 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 AHRP35869 848 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 IST1P53990 364 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 NAGLUP54802 743 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 POLR2LP62875 67 aaKnown RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms