RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 RBM4Q9BWF3 364 aaKnown RBP5.18□□□□□ -1.58
PCF11-202ENST00000528336 RPF1Q9H9Y2 349 aaKnown RBP5.18□□□□□ -1.58
PCF11-202ENST00000528336 MYNNQ9NPC7 610 aa5.18□□□□□ -1.58
PCF11-202ENST00000528336 PPANQ9NQ55 473 aaKnown RBP5.18□□□□□ -1.58
PCF11-202ENST00000528336 HPS4Q9NQG7 708 aa5.18□□□□□ -1.58
PCF11-202ENST00000528336 FLRT3Q9NZU0 649 aa5.18□□□□□ -1.58
PCF11-202ENST00000528336 BAIAP2L1Q9UHR4 511 aa5.18□□□□□ -1.58
PCF11-202ENST00000528336 RNF150Q9ULK6 438 aa5.18□□□□□ -1.58
PCF11-202ENST00000528336 EXOC6BQ9Y2D4 811 aa5.18□□□□□ -1.58
PCF11-202ENST00000528336 MRPS28Q9Y2Q9 187 aaKnown RBP5.18□□□□□ -1.58
PCF11-202ENST00000528336 BCL9O00512 1426 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 LRRC37A3O60309 1634 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 TRIM77I1YAP6 450 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 DNALI1O14645 258 aaPredicted RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 MAPK13O15264 365 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 ECI2O75521 394 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 FGFR1OPO95684 399 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 EML2O95834 649 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 HMBSP08397 361 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 CEACAM1P13688 526 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 CALB2P22676 271 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 CCT6AP40227 531 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 SERPINH1P50454 418 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 AP3M2P53677 418 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 MAPK12P53778 367 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 EIF3EP60228 445 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 SP3Q02447 781 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 ZNF415Q09FC8 603 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 LCP2Q13094 533 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 TSTA3Q13630 321 aaPredicted RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 WDR43Q15061 677 aaKnown RBP eCLIP5.17□□□□□ -1.58
PCF11-202ENST00000528336 TAF1BQ53T94 588 aaPredicted RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 SYT14P1Q58G82 188 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 XKR3Q5GH77 459 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 C11orf63Q6NUN7 778 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 MFSD12Q6NUT3 480 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 FAM198BQ6UWH4 519 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 GSG1LQ6UXU4 331 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 WDR88Q6ZMY6 472 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 ADAMTSL2Q86TH1 951 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 RTN4RL2Q86UN3 420 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 LRRC49Q8IUZ0 686 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 C4orf19Q8IY42 314 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 ST6GALNAC6Q969X2 333 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 SPSB1Q96BD6 273 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 DHX58Q96C10 678 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 PRAC1Q96KF2 57 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 PCDHB18PQ96TA0 734 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 MTG1Q9BT17 334 aaPredicted RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 KATNB1Q9BVA0 655 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 MIS12Q9H081 205 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 LSG1Q9H089 658 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 MINDY3Q9H8M7 445 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 SRD5A3Q9H8P0 318 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 GKN1Q9NS71 199 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 ABT1Q9ULW3 272 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 KCNK6Q9Y257 313 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 MRPS2Q9Y399 296 aaKnown RBP5.17□□□□□ -1.58
PCF11-202ENST00000528336 WNK3Q9BYP7 1800 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 PCDH11XQ9BZA7 1347 aa5.17□□□□□ -1.58
PCF11-202ENST00000528336 EP400Q96L91 3159 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 CHADO15335 359 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 MED7O43513 233 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 TBX19O60806 448 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 NADKO95544 446 aaPredicted RBP5.16□□□□□ -1.58
PCF11-202ENST00000528336 POP4O95707 220 aaKnown RBP5.16□□□□□ -1.58
PCF11-202ENST00000528336 PGK2P07205 417 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 CHMLP26374 656 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 PTBP1P26599 531 aaKnown RBP eCLIP5.16□□□□□ -1.58
PCF11-202ENST00000528336 PRKAR2BP31323 418 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 BMI1P35226 326 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 ACTR3P61158 418 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 PDE7AQ13946 482 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 CA9Q16790 459 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 LRIT3Q3SXY7 679 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 IFI44LQ53G44 452 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 PRAMEF20Q5VT98 475 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 TXNRD3NBQ6F5E7 133 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 MACC1Q6ZN28 852 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 ZBTB49Q6ZSB9 765 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 CENPQQ7L2Z9 268 aaPredicted RBP5.16□□□□□ -1.58
PCF11-202ENST00000528336 PIGZQ86VD9 579 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 THAP8Q8NA92 274 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 OR4C3Q8NH37 302 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 AKR7LQ8NHP1 331 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 HEXDCQ8WVB3 486 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 FBXO32Q969P5 355 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 ASCL2Q99929 193 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 PNNQ9H307 717 aaKnown RBP5.16□□□□□ -1.58
PCF11-202ENST00000528336 UBQLN3Q9H347 655 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 EXO5Q9H790 373 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 PANK4Q9NVE7 773 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 TBC1D13Q9NVG8 400 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 TMEM161AQ9NX61 479 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 BARHL2Q9NY43 387 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 SLCO1C1Q9NYB5 712 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 UBQLN2Q9UHD9 624 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 TMED3Q9Y3Q3 217 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 COMMD3-BMI1R4GMX3 469 aa5.16□□□□□ -1.58
PCF11-202ENST00000528336 RGPD2P0DJD1 1756 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms