RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 METTL4Q8N3J2 472 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ARL14Q8N4G2 192 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 EFHD2Q96C19 240 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 C19orf60Q96EN9 201 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 TSSK3Q96PN8 268 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 OR4K3Q96R72 315 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ORAI3Q9BRQ5 295 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 SPNS1Q9H2V7 528 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 NDOR1Q9UHB4 597 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 DNAJC15Q9Y5T4 150 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CEP192Q8TEP8 1941 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF860A6NHJ4 632 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 CCDC154A6NI56 674 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 OR7A17O14581 309 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF195O14628 629 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 KHNYNO15037 678 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 H2AFYO75367 372 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PIAS2O75928 621 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PIGAP37287 484 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ALDH9A1P49189 494 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RAB15P59190 212 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RAB8AP61006 207 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 MRPL28Q13084 256 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 GRB7Q14451 532 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC36A3Q495N2 470 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RNASE12Q5GAN4 147 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 DHRS4L2Q6PKH6 230 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC9B2Q86UD5 537 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RETREG3Q86VR2 466 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 WDR5BQ86VZ2 330 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 DCP2Q8IU60 420 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 MINDY1Q8N5J2 469 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 LINC01555Q8NAE3 123 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RCBTB1Q8NDN9 531 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RHBDD1Q8TEB9 315 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SMPDL3AQ92484 453 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PDLIM5Q96HC4 596 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SAV1Q9H4B6 383 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 MCCC2Q9HCC0 563 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RXFP3Q9NSD7 469 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ICKQ9UPZ9 632 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PLXNA2O75051 1894 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 M0R129 80 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SDHDO14521 159 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 CTDSP2O14595 271 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 TNFRSF10CO14798 259 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 WISP3O95389 354 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 IGLV3-19P01714 112 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 KRT6AP02538 564 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 KRT6BP04259 564 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 NME1P15531 152 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ENGP17813 658 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 DDCP20711 480 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 GSK3BP49841 420 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ARSFP54793 590 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 GFERP55789 205 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 GALK2Q01415 458 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 MED22Q15528 200 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RAB43Q86YS6 212 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PDPRQ8NCN5 879 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC5A11Q8WWX8 675 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 OTULINQ96BN8 352 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 C1QTNF6Q9BXI9 259 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 EVA1BQ9NVM1 165 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 HEATR5BQ9P2D3 2071 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM172BPA6NC97 362 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM25AB3EWG3 89 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM25CB3EWG5 89 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM25GB3EWG6 89 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 M0QX08 132 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 OR7A10O76100 309 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 TOXO94900 526 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PDYNP01213 254 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RPS17P08708 135 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 TGM1P22735 817 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 OR3A3P47888 321 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 HNMTP50135 292 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RPS13P62277 151 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 FOXM1Q08050 763 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 RPA4Q13156 261 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SP140Q13342 867 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 BTN1A1Q13410 526 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 AGERQ15109 404 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ATP6AP1LQ52LC2 224 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 IGSF11Q5DX21 431 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 C6orf141Q5SZD1 244 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PHF19Q5T6S3 580 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 DDI2Q5TDH0 399 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 PRSS58Q8IYP2 241 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 SUCOQ9UBS9 1254 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 UTS2RQ9UKP6 389 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 CLCA2Q9UQC9 943 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF451Q9Y4E5 1061 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 COL4A2P08572 1712 aa8.24□□□□□ -1.09
LIMCH1-209ENST00000509277 STX16O14662 325 aa8.23□□□□□ -1.09
LIMCH1-209ENST00000509277 NPHS1O60500 1241 aa8.23□□□□□ -1.09
LIMCH1-209ENST00000509277 MT-ND2P03891 347 aa8.23□□□□□ -1.09
LIMCH1-209ENST00000509277 GPIP06744 558 aa8.23□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC15A1P46059 708 aa8.23□□□□□ -1.09
LIMCH1-209ENST00000509277 KCNAB1Q14722 419 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms