RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 LRATO95237 230 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 HOXD4P09016 255 aaPredicted RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 MSX1P28360 303 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 SERPINB3P29508 390 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 ARFIP1P53367 373 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 SLC37A1P57057 533 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 ETF1P62495 437 aaKnown RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 PHEXP78562 749 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 CUL3Q13618 768 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 KLC3Q6P597 504 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 CYP20A1Q6UW02 462 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 RNF111Q6ZNA4 994 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 SLC29A4Q7RTT9 530 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 CDH24Q86UP0 819 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 DMRTC2Q8IXT2 367 aaPredicted RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 OR10G3Q8NGC4 313 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 WDR20Q8TBZ3 569 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 ATP6V1E2Q96A05 226 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 SARAFQ96BY9 339 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 REPS1Q96D71 796 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 SPACA9Q96E40 222 aaPredicted RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 CDK15Q96Q40 435 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 VPS11Q9H270 941 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 NOL11Q9H8H0 719 aaKnown RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 ZFP64Q9NPA5 681 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 ZNF358Q9NW07 568 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 LYARQ9NX58 379 aaKnown RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 PSD3Q9NYI0 1048 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 CPSF2Q9P2I0 782 aaKnown RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 SPRR3Q9UBC9 169 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 Q9UFV3 132 aa12.23□□□□□ -0.45
CPSF4-210ENST00000469897 TNPO3Q9Y5L0 923 aaKnown RBP12.23□□□□□ -0.45
CPSF4-210ENST00000469897 A0A1W2PS29 197 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 FOXE1O00358 373 aaPredicted RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 OR7A17O14581 309 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 HCN1O60741 890 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 CLDN9O95484 217 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 ALDOAP04075 364 aaKnown RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 CLPSP04118 112 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 FBXO45P0C2W1 286 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 SLC35E2P0CK97 266 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 ENDOUP21128 410 aaKnown RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 SSTR4P31391 388 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 ADH7P40394 386 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 ZFP36L2P47974 494 aaKnown RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 TRPC1P48995 793 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 TESK1Q15569 626 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 UBAP2Q5T6F2 1119 aaKnown RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 CCDC91Q7Z6B0 441 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 PLD6Q8N2A8 252 aaKnown RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 L3MBTL4Q8NA19 623 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 PHF21BQ96EK2 531 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 ZNF559Q9BR84 538 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 PELOQ9BRX2 385 aaKnown RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 WWTR1Q9GZV5 400 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 WDR41Q9HAD4 459 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 ZDHHC18Q9NUE0 388 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 CNIH4Q9P003 139 aa12.22□□□□□ -0.45
CPSF4-210ENST00000469897 BOKQ9UMX3 212 aaPredicted RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 CHCHD2Q9Y6H1 151 aaPredicted RBP12.22□□□□□ -0.45
CPSF4-210ENST00000469897 C2orf92A0A1B0GVN3 265 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 CCDC189A1A4V9 331 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 UGDHO60701 494 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 WDR1O75083 606 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 AIFM1O95831 613 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 KLK1P06870 262 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 CT62P0C5K7 136 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 NR2F6P10588 404 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 GALNSP34059 522 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 ARL1P40616 181 aaPredicted RBP12.21□□□□□ -0.45
CPSF4-210ENST00000469897 DLX5P56178 289 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 SNTB1Q13884 538 aaKnown RBP12.21□□□□□ -0.45
CPSF4-210ENST00000469897 EBPQ15125 230 aaKnown RBP12.21□□□□□ -0.45
CPSF4-210ENST00000469897 SPRED3Q2MJR0 410 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 C1orf185Q5T7R7 199 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 CES4AQ5XG92 561 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 TMEM198Q66K66 360 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 NUDT13Q86X67 352 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 CLYBLQ8N0X4 340 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 LRRC25Q8N386 305 aaPredicted RBP12.21□□□□□ -0.45
CPSF4-210ENST00000469897 FBXW8Q8N3Y1 598 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 PTGR2Q8N8N7 351 aaPredicted RBP12.21□□□□□ -0.45
CPSF4-210ENST00000469897 OR52B6Q8NGF0 335 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 DIO2Q92813 273 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 SLC6A15Q9H2J7 730 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 ACKR4Q9NPB9 350 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 NINJ2Q9NZG7 142 aa12.21□□□□□ -0.45
CPSF4-210ENST00000469897 CNOT11Q9UKZ1 510 aaKnown RBP12.21□□□□□ -0.45
CPSF4-210ENST00000469897 LRRC3CA6NJW4 275 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 OR6C76A6NM76 312 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 ACSL3O95573 720 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 GABRA1P14867 456 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 PIK3R1P27986 724 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 PHBP35232 272 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 SERPINB8P50452 374 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 XKP51811 444 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 TBL3Q12788 808 aaKnown RBP12.2□□□□□ -0.46
CPSF4-210ENST00000469897 MYBPHQ13203 477 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 NTRK2Q16620 822 aa12.2□□□□□ -0.46
CPSF4-210ENST00000469897 SGO1Q5FBB7 561 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms