RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 ADGRE2Q9UHX3 823 aa20.78■□□□□ 0.92
USP4-208ENST00000464168 PHF11Q9UIL8 331 aa20.78■□□□□ 0.92
USP4-208ENST00000464168 ERVK-19Q9WJR5 959 aa20.78■□□□□ 0.92
USP4-208ENST00000464168 NCKAP5O14513 1909 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 KDM4EB2RXH2 506 aaPredicted RBP20.77■□□□□ 0.92
USP4-208ENST00000464168 PROM1O43490 865 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 GPR75O95800 540 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 CEACAM8P31997 349 aaPredicted RBP20.77■□□□□ 0.92
USP4-208ENST00000464168 PEX19P40855 299 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 PIK3CBP42338 1070 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 RAP1GDS1P52306 607 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 SLC37A1P57057 533 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 MRPS25P82663 173 aaKnown RBP20.77■□□□□ 0.92
USP4-208ENST00000464168 DDX39BQ13838 428 aaKnown RBP20.77■□□□□ 0.92
USP4-208ENST00000464168 CEBPEQ15744 281 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 NTRK2Q16620 822 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 SPRED3Q2MJR0 410 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 GRHL2Q6ISB3 625 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 RNF111Q6ZNA4 994 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 SLC29A4Q7RTT9 530 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 ATOH8Q96SQ7 321 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 SH3GL2Q99962 352 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 DOHHQ9BU89 302 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 DMRT3Q9NQL9 472 aa20.77■□□□□ 0.92
USP4-208ENST00000464168 RYDENQ9NUL5 291 aaKnown RBP20.77■□□□□ 0.92
USP4-208ENST00000464168 A6NNC1 897 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 AHRRA9YTQ3 701 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 UBXN8O00124 270 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 TRIM3O75382 744 aaPredicted RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 EPPINO95925 133 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 CLPSP04118 112 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 SLC35E2BP0CK96 405 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 HOXB4P17483 251 aaPredicted RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 BMP5P22003 454 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 DUSP8Q13202 625 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 EBPQ15125 230 aaKnown RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 ACSF3Q4G176 576 aaPredicted RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 POMZP3Q6PJE2 187 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 C3orf62Q6ZUJ4 267 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 CDC20BQ86Y33 519 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 LIX1Q8N485 282 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 TNIP2Q8NFZ5 429 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 RIT1Q92963 219 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 RMND5BQ96G75 393 aaPredicted RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 MTERF1Q99551 399 aaKnown RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 ZNF717Q9BY31 904 aaPredicted RBP20.76■□□□□ 0.91
USP4-208ENST00000464168 NMRAL1Q9HBL8 299 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 PLEKHA6Q9Y2H5 1048 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 TSC22D4Q9Y3Q8 395 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 ASB4Q9Y574 426 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 SAR1BQ9Y6B6 198 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 ABCA2Q9BZC7 2435 aa20.76■□□□□ 0.91
USP4-208ENST00000464168 VPS13CQ709C8 3753 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 A0A1W2PR48 441 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 ANKRD33BA6NCL7 494 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 GLOD5A6NK44 160 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 SUPT3HB4E1H0 165 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 DVL2O14641 736 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 OR10H2O60403 315 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 KERAO60938 352 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 SUPT3HO75486 399 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 EEDO75530 441 aaKnown RBP20.75■□□□□ 0.91
USP4-208ENST00000464168 FAM155BO75949 473 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 EPB42P16452 691 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 GDF1P27539 372 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 SPRP35270 261 aaPredicted RBP20.75■□□□□ 0.91
USP4-208ENST00000464168 WNT3P56703 355 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 GPX6P59796 221 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 FBXL19-AS1Q494R0 122 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 FLYWCH1Q4VC44 716 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 MRM1Q6IN84 353 aaKnown RBP20.75■□□□□ 0.91
USP4-208ENST00000464168 TMEM64Q6YI46 380 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 CMC1Q7Z7K0 106 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 TEX9Q8N6V9 391 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 ZNF441Q8N8Z8 693 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 FAM222BQ8WU58 562 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 RNASE6Q93091 150 aaKnown RBP20.75■□□□□ 0.91
USP4-208ENST00000464168 TIMP4Q99727 224 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 PELOQ9BRX2 385 aaKnown RBP20.75■□□□□ 0.91
USP4-208ENST00000464168 CENPKQ9BS16 269 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 KCNF1Q9H3M0 494 aa20.75■□□□□ 0.91
USP4-208ENST00000464168 MPDZO75970 2070 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 ARHGAP21Q5T5U3 1957 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 C15orf38-AP3S2A0A0A6YYH1 394 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 OR6C76A6NM76 312 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 EIF3HO15372 352 aaKnown RBP eCLIP20.74■□□□□ 0.91
USP4-208ENST00000464168 TMPRSS11DO60235 418 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 MTHFD2P13995 350 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 DNASE1P24855 282 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 TIMP3P35625 211 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 BUD31P41223 144 aaPredicted RBP20.74■□□□□ 0.91
USP4-208ENST00000464168 ASCL1P50553 236 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 ARFIP1P53367 373 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 RPS13P62277 151 aaKnown RBP20.74■□□□□ 0.91
USP4-208ENST00000464168 PPP2R2AP63151 447 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 CRYZQ08257 329 aaKnown RBP20.74■□□□□ 0.91
USP4-208ENST00000464168 GRTP1Q5TC63 336 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 RAPH1Q70E73 1250 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 CTAGE3PQ8IX95 158 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 DIO2Q92813 273 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms