RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 DNAJB5O75953 348 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 LINC00032P0C843 101 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 CHN1P15882 459 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 PRPS1L1P21108 318 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 NT5EP21589 574 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 CEBPEQ15744 281 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 MPEG1Q2M385 716 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 TTMPQ5BVD1 217 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 PCSK4Q6UW60 755 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 TMEM125Q96AQ2 219 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 PPCDCQ96CD2 204 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 ZBED6CLQ96FA7 236 aaPredicted RBP9.98□□□□□ -0.81
UBR4-208ENST00000459947 MAGEB18Q96M61 343 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 MEAF6Q9HAF1 191 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 ACSS1Q9NUB1 689 aaPredicted RBP9.98□□□□□ -0.81
UBR4-208ENST00000459947 CLDN16Q9Y5I7 305 aa9.98□□□□□ -0.81
UBR4-208ENST00000459947 LDB3O75112 727 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 KRT16P08779 473 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 SSR4P51571 173 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 HNRNPFP52597 415 aaKnown RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 Q0VFX4 171 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 Q6ZSR9 355 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 DNAJB8Q8NHS0 232 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 ZNF75CPQ92670 426 aaPredicted RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 CXorf21Q9HAI6 301 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 TMEM45AQ9NWC5 275 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 PTGFRNQ9P2B2 879 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 ATP6V1HQ9UI12 483 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 B3GNT3Q9Y2A9 372 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 LAMA1P25391 3075 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 A0A087WV62 115 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 A8MUA0 341 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 PDPK1O15530 556 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 HLCSP50747 726 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 LY6DQ14210 128 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 ZNF169Q14929 603 aaPredicted RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 KIAA0040Q15053 153 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 LSM12Q3MHD2 195 aaKnown RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 SCIMPQ6UWF3 145 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 ACAD11Q709F0 780 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 FNDC5Q8NAU1 212 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 PTPMT1Q8WUK0 201 aaPredicted RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 ZBTB18Q99592 522 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 OR8D2Q9GZM6 311 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 C3orf14Q9HBI5 128 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 TIMMDC1Q9NPL8 285 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 SLAMF7Q9NQ25 335 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 STMN3Q9NZ72 180 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 CCDC88CQ9P219 2028 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 IGHV3-20A0A0C4DH32 117 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 ERAL1O75616 437 aaKnown RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 DDAH2O95865 285 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 NAGAP17050 411 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 TXNL4AP83876 142 aaKnown RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 OCRLQ01968 901 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 FUT7Q11130 342 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 GALNTL6Q49A17 601 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 C6orf136Q5SQH8 315 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 VWA5B2Q8N398 1253 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 ZNF781Q8N8C0 355 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 PIWIL2Q8TC59 973 aaKnown RBP9.97□□□□□ -0.81
UBR4-208ENST00000459947 ACTRT2Q8TDY3 377 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 PSMF1Q92530 271 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 MOAP1Q96BY2 351 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 HBEGFQ99075 208 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 SORT1Q99523 831 aa9.97□□□□□ -0.81
UBR4-208ENST00000459947 CACNA1BQ00975 2339 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 MYO1GB0I1T2 1018 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 SKAP2O75563 359 aaPredicted RBP9.96□□□□□ -0.81
UBR4-208ENST00000459947 CRYABP02511 175 aaKnown RBP9.96□□□□□ -0.81
UBR4-208ENST00000459947 GPR143P51810 404 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 NRG3P56975 720 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 PDE7AQ13946 482 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 CEP70Q8NHQ1 597 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 CDC26Q8NHZ8 85 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.96□□□□□ -0.813e-29■■■■□ 26.3
UBR4-208ENST00000459947 SENP5Q96HI0 755 aaPredicted RBP9.96□□□□□ -0.81
UBR4-208ENST00000459947 SGCZQ96LD1 299 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 CNPPD1Q9BV87 410 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 TUBB1Q9H4B7 451 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 AGPAT4Q9NRZ5 378 aa9.96□□□□□ -0.81
UBR4-208ENST00000459947 KLF13Q9Y2Y9 288 aaPredicted RBP9.96□□□□□ -0.81
UBR4-208ENST00000459947 POLR3HQ9Y535 204 aaPredicted RBP9.96□□□□□ -0.81
UBR4-208ENST00000459947 GOLGA8QA0A0J9YX86 632 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 GOLGA8OA6NCC3 632 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 GOLGA8NF8WBI6 632 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 ACOX3O15254 700 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 ZNF267Q14586 743 aaPredicted RBP9.96□□□□□ -0.82
UBR4-208ENST00000459947 MLC1Q15049 377 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 TMEM156Q8N614 296 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 APCDD1LQ8NCL9 501 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 VPS37AQ8NEZ2 397 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 ASB15Q8WXK1 588 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 HSPBAP1Q96EW2 488 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 EBPLQ9BY08 206 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.96□□□□□ -0.82
UBR4-208ENST00000459947 MRTO4Q9UKD2 239 aaKnown RBP9.96□□□□□ -0.82
UBR4-208ENST00000459947 GABRR3A8MPY1 467 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 A8MUI8 341 aa9.96□□□□□ -0.82
UBR4-208ENST00000459947 DYNC1I1O14576 645 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms