RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 HSPB2A8KAH6 182 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 FAM166BA8MTA8 275 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 AHRRA9YTQ3 701 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 RTCAO00442 366 aaKnown RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 PLPP1O14494 284 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 FGF17O60258 216 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 KLK8O60259 260 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 PRKNO60260 465 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 SMIM24O75264 130 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ATP6AP2O75787 350 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 PIAS1O75925 651 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 KRT38O76015 456 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 TOXO94900 526 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 SEMA3DO95025 777 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ETHE1O95571 254 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 IGKV3-11P04433 115 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 FAM58BPP0C7Q3 252 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 NR2F6P10588 404 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 CD1EP15812 388 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 EPORP19235 508 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 MSX1P28360 303 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 GCKP35557 465 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ARL1P40616 181 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 MAGEA5P43359 124 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 SERPINB9P50453 376 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 RIPPLY3P57055 190 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ASPHQ12797 758 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 GTF2H2Q13888 395 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 HSPB2Q16082 182 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 CPSF6Q16630 551 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS41-208ENST00000448833 PFKFB4Q16877 469 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 TSNAXIP1Q2TAA8 658 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 FBXO48Q5FWF7 155 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 LGSNQ5TDP6 509 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 MROH9Q5TGP6 573 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 TTC19Q6DKK2 380 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 OR52E8Q6IFG1 317 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 C8orf74Q6P047 294 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 GTF2H2CQ6P1K8 395 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ZNF585AQ6P3V2 769 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 SPNS3Q6ZMD2 512 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 THSD4Q6ZMP0 1018 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ZNF793Q6ZN11 406 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 C16orf47Q6ZP98 133 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 TRILQ7L0X0 811 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ZNF572Q7Z3I7 529 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 CMC1Q7Z7K0 106 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 CDH24Q86UP0 819 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 NUDT13Q86X67 352 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 RELL1Q8IUW5 271 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 DMRTC2Q8IXT2 367 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 TMEM251Q8N6I4 163 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 L3MBTL4Q8NA19 623 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 FAM13CQ8NE31 585 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 C17orf47Q8NEP4 570 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 OR7G1Q8NGA0 311 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 OR4K14Q8NGD5 310 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 TRPC4APQ8TEL6 797 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 MTERF1Q99551 399 aaKnown RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 TTYH2Q9BSA4 534 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 NTMT1Q9BV86 223 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 LIN28AQ9H9Z2 209 aaKnown RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 SNX15Q9NRS6 342 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 IGSF5Q9NSI5 407 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 PNPLA3Q9NST1 481 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 FOXD3Q9UJU5 478 aaPredicted RBP6.53□□□□□ -1.36
VPS41-208ENST00000448833 ADAM29Q9UKF5 820 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 NFU1Q9UMS0 254 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ATG4BQ9Y4P1 393 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 CSMD2Q7Z408 3487 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 MED13LQ71F56 2210 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 EXPH5Q8NEV8 1989 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 NCKAP5O14513 1909 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 STX16-NPEPL1H3BU86 382 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 C19orf84I3L1E1 186 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 SAP18O00422 153 aaKnown RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 DVL2O14641 736 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 STX16O14662 325 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 FAM155BO75949 473 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ZWINTO95229 277 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 C1QAP02745 245 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 INHBAP08476 426 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 FBXO45P0C2W1 286 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 MTHFD2P13995 350 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 NAGAP17050 411 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 IGFBP2P18065 325 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 KRT15P19012 456 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 DEKP35659 375 aaKnown RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 CCNG1P51959 295 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 SLC37A1P57057 533 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 NUP107P57740 925 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 RPS13P62277 151 aaKnown RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 HERVK_113P63132 956 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ERVK-8P63133 956 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 PSPHP78330 225 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 GUCY2DQ02846 1103 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 C2orf54Q08AI8 447 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 FOXO1Q12778 655 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 DLG1Q12959 904 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 IFT88Q13099 833 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms