RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RAB7BQ96AH8 199 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 EXOSC8Q96B26 276 aaKnown RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 ZNF514Q96K75 400 aaPredicted RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 SIGLEC11Q96RL6 698 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 LGR4Q9BXB1 951 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 FOXQ1Q9C009 403 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 SLAMF7Q9NQ25 335 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 MBNL1Q9NR56 388 aaKnown RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 THSD1Q9NS62 852 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 SLC23A2Q9UGH3 650 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 MOSPD1Q9UJG1 213 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 FBXO9Q9UK97 447 aaPredicted RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 HCN4Q9Y3Q4 1203 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 AP1M2Q9Y6Q5 423 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 A0A1W2PQU0 124 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 KRBA1A5PL33 1030 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 CLDN24A6NM45 220 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 H7BY64 318 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 PTHP01270 115 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 UQCRC2P22695 453 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 ACSL1P33121 698 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 SGCGQ13326 291 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 OXA1LQ15070 435 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 TBCEQ15813 527 aaPredicted RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 COLEC12Q5KU26 742 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 C10orf62Q5T681 223 aaPredicted RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 C11orf96Q7Z7L8 435 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 ARMC8Q8IUR7 673 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 ADGRF3Q8IZF5 1079 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 HORMAD2Q8N7B1 307 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 VANGL1Q8TAA9 524 aaPredicted RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 PRAP1Q96NZ9 151 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 CHCHD6Q9BRQ6 235 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 BTBD2Q9BX70 525 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 OR52A5Q9H2C5 316 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 DSN1Q9H410 356 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 DPEP2Q9H4A9 486 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 C11orf16Q9NQ32 467 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 ZFR2Q9UPR6 939 aaKnown RBP10.13□□□□□ -0.79
CUX1-205ENST00000425244 ENPP4Q9Y6X5 453 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 CCDC88CQ9P219 2028 aa10.13□□□□□ -0.79
CUX1-205ENST00000425244 SOX14O95416 240 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 GASTP01350 101 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 ADORA3P0DMS8 318 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 KELP23276 732 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 S100A1P23297 94 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 CRISP3P54108 245 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 ADPRHP54922 357 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 CDC42P60953 191 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 CD300CQ08708 224 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 TP53BP2Q13625 1128 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 PTGES3Q15185 160 aaKnown RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 MLF2Q15773 248 aaPredicted RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 WSCD2Q2TBF2 565 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 TMEM52BQ4KMG9 183 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 CRB2Q5IJ48 1285 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 REEP3Q6NUK4 255 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 PDZD3Q86UT5 571 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 DCUN1D3Q8IWE4 304 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 SCAIQ8N9R8 606 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 B3GNT7Q8NFL0 401 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 IL4I1Q96RQ9 567 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 MROQ9BYG7 248 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 OR51E2Q9H255 320 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 NMNAT1Q9HAN9 279 aaPredicted RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 LMAN1LQ9HAT1 526 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 FBXO8Q9NRD0 319 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 ABCB10Q9NRK6 738 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 QPCTLQ9NXS2 382 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 AHSPQ9NZD4 102 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 OSGIN1Q9UJX0 560 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 PRELID1Q9Y255 219 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 SNX11Q9Y5W9 270 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 TRBV4-1A0A0J9YWV2 114 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 E9PQ18 207 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 GRK5P34947 590 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 FEN1P39748 380 aaKnown RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 PCBP3P57721 371 aaKnown RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 PPP2CBP62714 309 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 PPP2CAP67775 309 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 MRPS21P82921 87 aaKnown RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 FGL2Q14314 439 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 ARMCX4Q5H9R4 360 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 KHDRBS2Q5VWX1 349 aaKnown RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 DEF8Q6ZN54 512 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 PTCHD4Q6ZW05 846 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 IKBIPQ70UQ0 350 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 HMGN2P46Q86SG4 172 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 SLC7A5P1Q8MH63 180 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 SIX5Q8N196 739 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 ANKRD53Q8N9V6 530 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 SLC38A5Q8WUX1 472 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 MTERF3Q96E29 417 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 OTUB1Q96FW1 271 aaPredicted RBP10.12□□□□□ -0.79
CUX1-205ENST00000425244 TMEM19Q96HH6 336 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 NEURL2Q9BR09 285 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 CA5BQ9Y2D0 317 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 TSC22D4Q9Y3Q8 395 aa10.12□□□□□ -0.79
CUX1-205ENST00000425244 PDPK1O15530 556 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 RNGTTO60942 597 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms