RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 GLIPR2Q9H4G4 154 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 FZD3Q9NPG1 666 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 POT1Q9NUX5 634 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 TEX10Q9NXF1 929 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 USP36Q9P275 1121 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 TMCC3Q9ULS5 477 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 PLEKHM1Q9Y4G2 1056 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 TESMINQ9Y4I5 508 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF780BQ9Y6R6 833 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 LRP4O75096 1905 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 MUC6Q6W4X9 2439 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF318Q5VUA4 2279 aa12.84□□□□□ -0.35
LIMS1-205ENST00000410093 MDC1Q14676 2089 aaKnown RBP12.84□□□□□ -0.35
LIMS1-205ENST00000410093 KIR2DS5A0A0G2JLQ3 304 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 A0A0G2JNG1 304 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 A0A0G2JPF8 293 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 OR2A25A4D2G3 310 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 HNRNPCL2B2RXH8 293 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 HNRNPCL3B7ZW38 293 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 H3BMQ9 156 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 KIR2DS3K7RE56 304 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 MITFO75030 526 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 SLITRK5O94991 958 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 DIRAS1O95057 198 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 ADAP00813 363 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 HNRNPCL4P0DMR1 293 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 NDUFV2P19404 249 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 CCNA2P20248 432 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 CD247P20963 164 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 MATN1P21941 496 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 PEBP1P30086 187 aaKnown RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 BUD31P41223 144 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 YAP1P46937 504 aaKnown RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 KCNJ5P48544 419 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 NCBP2P52298 156 aaKnown RBP eCLIP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 CDH12P55289 794 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 IL1RL1Q01638 556 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 TP53BP2Q13625 1128 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 KIR2DS5Q14953 304 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 SUZ12Q15022 739 aaKnown RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 LAIR2Q6ISS4 152 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF793Q6ZN11 406 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 ABI3BPQ7Z7G0 1075 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 NRROSQ86YC3 692 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 P3H2Q8IVL5 708 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 TAGAPQ8N103 731 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 LGI4Q8N135 537 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF655Q8N720 491 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 AVL9Q8NBF6 648 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 BPIFB6Q8NFQ5 453 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 APOBEC4Q8WW27 367 aaKnown RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 RORBQ92753 470 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 MYDGFQ969H8 173 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 TM4SF19Q96DZ7 209 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 TMEM19Q96HH6 336 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 DHRS1Q96LJ7 313 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 COG8Q96MW5 612 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 BARD1Q99728 777 aaKnown RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 ACER3Q9NUN7 267 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 SCHIP1Q9P0W5 487 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 MGAT4BQ9UQ53 548 aa12.83□□□□□ -0.35
LIMS1-205ENST00000410093 MRPS17Q9Y2R5 130 aaKnown RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 GPC6Q9Y625 555 aaPredicted RBP12.83□□□□□ -0.35
LIMS1-205ENST00000410093 ATG2BQ96BY7 2078 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 PRAMEF33A0A0G2JMD5 474 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 DUXAA6NLW8 204 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 ZNF99A8MXY4 864 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-205ENST00000410093 FAAHO00519 579 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 EMC8O43402 210 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 PROM1O43490 865 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 RGS10O43665 173 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 PRAMEF10O60809 474 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 SEMA4FO95754 770 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 OPN1SWP03999 348 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 BCHEP06276 602 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 TLX1P31314 330 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-205ENST00000410093 ACTR1BP42025 376 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 DGKEP52429 567 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 STARD6P59095 220 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 ACTR1AP61163 376 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 TCF15Q12870 199 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 CCINQ13939 588 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 UBXN2BQ14CS0 331 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 NDUFA9Q16795 377 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 GPR107Q5VW38 600 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 B3GNT8Q7Z7M8 397 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 ANKRD13BQ86YJ7 626 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 TRIM48Q8IWZ4 208 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 MMP21Q8N119 569 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 DTWD2Q8NBA8 298 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 CAMKVQ8NCB2 501 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 OR4E2Q8NGC2 313 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 RPLP0P6Q8NHW5 317 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 SUN3Q8TAQ9 357 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 ALPK1Q96QP1 1244 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 SERINC2Q96SA4 455 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 NELL2Q99435 816 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 SLC6A17Q9H1V8 727 aa12.83□□□□□ -0.36
LIMS1-205ENST00000410093 ZCCHC3Q9NUD5 404 aaKnown RBP12.83□□□□□ -0.36
LIMS1-205ENST00000410093 SPHK1Q9NYA1 384 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms