RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SUN3Q8TAQ9 357 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 GRHL3Q8TE85 626 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 PHF11Q9UIL8 331 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 SPATA2Q9UM82 520 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 AP1M2Q9Y6Q5 423 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 HOXB2P14652 356 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 CELP19835 753 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 PSMB5P28074 263 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 ZNF181Q2M3W8 571 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 EGFL6Q8IUX8 553 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 OR5D16Q8NGK9 328 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 GGHQ92820 318 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 CUEDC1Q9NWM3 386 aaPredicted RBP17.63■□□□□ 0.41
USP48-204ENST00000400301 CDH7Q9ULB5 785 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 C1orf226A1L170 272 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 VNN2O95498 520 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 ARL9Q6T311 187 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 ZNF517Q6ZMY9 492 aaPredicted RBP17.63■□□□□ 0.41
USP48-204ENST00000400301 TMEM179BQ7Z7N9 219 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 LHFPL3Q86UP9 236 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 LRRC17Q8N6Y2 441 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 RIPOR3Q96MK2 946 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 KXD1Q9BQD3 176 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 PELI2Q9HAT8 420 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 FZD3Q9NPG1 666 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 ERVK13-1Q9NX77 482 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 OR51B4Q9Y5P0 310 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 KRBA1A5PL33 1030 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 FOXE1O00358 373 aaPredicted RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 EMC8O43402 210 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 HLA-DPB1P04440 258 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 ARAFP10398 606 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 RPS21P63220 83 aaKnown RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 KDM4DQ6B0I6 523 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 GTF2IRD2BQ6EKJ0 949 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 CCBE1Q6UXH8 406 aaPredicted RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 GTF2IRD2Q86UP8 949 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 MACROD1Q9BQ69 325 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 GPR34Q9UPC5 381 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 PSME4Q14997 1843 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 CD160O95971 181 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 GAB1Q13480 694 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 RUNX3Q13761 415 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 ITPRIPL2Q3MIP1 535 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 DEFB134Q4QY38 66 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 TMEM35AQ53FP2 167 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 HENMT1Q5T8I9 393 aaKnown RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 NRROSQ86YC3 692 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 FAM217AQ8IXS0 508 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 ZNF433Q8N7K0 673 aaPredicted RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 GNPDA2Q8TDQ7 276 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 DOK4Q8TEW6 326 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 RBM38Q9H0Z9 239 aaKnown RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 ZNF222Q9UK12 451 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 SLC2A2P11168 524 aaPredicted RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 TBCEQ15813 527 aaPredicted RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 FAM214AQ32MH5 1076 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 PYCR3Q53H96 274 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 IZUMO1Q8IYV9 350 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 OR6Q1Q8NGQ2 317 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 OSTF1Q92882 214 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 TMEM121BQ9BXQ6 578 aaPredicted RBP17.62■□□□□ 0.41
USP48-204ENST00000400301 SMURF1Q9HCE7 757 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 SLC6A13Q9NSD5 602 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 NKIRAS2Q9NYR9 191 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 IFT52Q9Y366 437 aa17.62■□□□□ 0.41
USP48-204ENST00000400301 OR52A4PA6NMU1 304 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 TMX2-CTNND1H3BSU7 103 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 DHFRP00374 187 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 FURINP09958 794 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 NPPBP16860 134 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 B4GALNT1Q00973 533 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ANGPT1Q15389 498 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 C22orf42Q6IC83 251 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ADNP2Q6IQ32 1131 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ABHD13Q7L211 337 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ADGRD2Q7Z7M1 963 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 OR4K14Q8NGD5 310 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 CHTF18Q8WVB6 975 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 BTBD1Q9H0C5 482 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 SP140LQ9H930 580 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 BTN3A3O00478 584 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 CLDN4O14493 209 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 CPNE6O95741 557 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 PSKH1P11801 424 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 POLR2CP19387 275 aaPredicted RBP17.61■□□□□ 0.41
USP48-204ENST00000400301 AKT2P31751 481 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 LEXMQ3ZCV2 418 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 BICRALQ6AI39 1079 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 MOAP1Q96BY2 351 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 CD180Q99467 661 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 MOV10Q9HCE1 1003 aaKnown RBP17.61■□□□□ 0.41
USP48-204ENST00000400301 LIPT1Q9Y234 373 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 CMAHPQ9Y471 501 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ITPKBP27987 946 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 CAPZA2P47755 286 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 PLAG1Q6DJT9 500 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 NLGN4XQ8N0W4 816 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 GHDCQ8N2G8 530 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 HORMAD2Q8N7B1 307 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms