RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LTB4RQ15722 352 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 TRIM48Q8IWZ4 208 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 KAT2AQ92830 837 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 GTPBP3Q969Y2 492 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 TREX2Q9BQ50 279 aaPredicted RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 EVA1BQ9NVM1 165 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 USP36Q9P275 1121 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 MRPS2Q9Y399 296 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 ZNF860A6NHJ4 632 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 TNFRSF10CO14798 259 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 DPM1O60762 260 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 CPNE6O95741 557 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 IFNA14P01570 189 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 EIF2S1P05198 315 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 HMGN2P05204 90 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 MAP2K4P45985 399 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 EIF2B5Q13144 721 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 MICAQ29983 383 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 DEFB134Q4QY38 66 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 CHRDL2Q6WN34 429 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 OR9A2Q8NGT5 310 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 PSMA8Q8TAA3 256 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 UTP15Q8TED0 518 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 APOBEC4Q8WW27 367 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 DNASE1L2Q92874 299 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 SLC35G5Q96KT7 338 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 OR2A5Q96R48 311 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 PIP5K1AQ99755 562 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 QRSL1Q9H0R6 528 aaKnown RBP14.23□□□□□ -0.13
GPC3-202ENST00000394299 AMBNQ9NP70 447 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 EQTNQ9NQ60 294 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 THSD1Q9NS62 852 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 ACTR10Q9NZ32 417 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 PCDHGA6Q9Y5G7 932 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 ENPP4Q9Y6X5 453 aa14.23□□□□□ -0.13
GPC3-202ENST00000394299 H3BMQ9 156 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 INMTO95050 263 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 GADD45GO95257 159 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ZBTB11O95625 1053 aaPredicted RBP14.22□□□□□ -0.13
GPC3-202ENST00000394299 NDUFS1P28331 727 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 NTSP30990 170 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ILF3Q12906 894 aaKnown RBP eCLIP14.22□□□□□ -0.132e-7■■■■□ 20.5
GPC3-202ENST00000394299 KEAP1Q14145 624 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 GAS6Q14393 721 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 MAD2L1BPQ15013 274 aaPredicted RBP14.22□□□□□ -0.13
GPC3-202ENST00000394299 FBXO43Q4G163 708 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 SLC48A1Q6P1K1 146 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 FIGLAQ6QHK4 219 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 PRSS41Q7RTY9 318 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ASPGQ86U10 573 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 TBC1D19Q8N5T2 526 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 NATD1Q8N6N6 113 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 OR13F1Q8NGS4 319 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 COG8Q96MW5 612 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 NODALQ96S42 347 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ZNF347Q96SE7 839 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 TRNAU1APQ9NX07 287 aaKnown RBP14.22□□□□□ -0.13
GPC3-202ENST00000394299 EHD3Q9NZN3 535 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 FAM32AQ9Y421 112 aaKnown RBP14.22□□□□□ -0.13
GPC3-202ENST00000394299 PCDHGA2Q9Y5H1 932 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 TRIOBPQ9H2D6 2365 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 MBTPS2O43462 519 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 HCRTR1O43613 425 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 KDM1AO60341 852 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 WBP4O75554 376 aaKnown RBP14.22□□□□□ -0.13
GPC3-202ENST00000394299 GASTP01350 101 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 IFNW1P05000 195 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 NR2F1P10589 423 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 CD6P30203 668 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 MC3RP41968 323 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 YPEL5P62699 121 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 FUT5Q11128 374 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 IL18R1Q13478 541 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 MLC1Q15049 377 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 TMEM236Q5W0B7 351 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ABI3BPQ7Z7G0 1075 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ZNF605Q86T29 641 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ZBTB46Q86UZ6 589 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ENTHD1Q8IYW4 607 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 APH1BQ8WW43 257 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 COL26A1Q96A83 441 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 ZG16BQ96DA0 208 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 CSF3RQ99062 836 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 STARD5Q9NSY2 213 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 CPNE7Q9UBL6 633 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 HS3ST3A1Q9Y663 406 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 SDK1Q7Z5N4 2213 aa14.22□□□□□ -0.13
GPC3-202ENST00000394299 TRBV4-1A0A0J9YWV2 114 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 A0A1B0GVG6 124 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 A0A1W2PPW3 197 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 OR2A25A4D2G3 310 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 DNAJB5O75953 348 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 TNFP01375 233 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 THEGLP0DJG4 465 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 GSTM2P28161 218 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 STXBP1P61764 594 aaKnown RBP14.21□□□□□ -0.13
GPC3-202ENST00000394299 SIM1P81133 766 aaPredicted RBP14.21□□□□□ -0.13
GPC3-202ENST00000394299 ID2Q02363 134 aa14.21□□□□□ -0.13
GPC3-202ENST00000394299 EMX1Q04741 257 aaPredicted RBP14.21□□□□□ -0.13
GPC3-202ENST00000394299 RUNX2Q13950 521 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms