RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PCDHGA12O60330 932 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CCNB2O95067 398 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 VIPP01282 170 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 TIE1P35590 1138 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 P2RY2P41231 377 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 SGCGQ13326 291 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 AQP6Q13520 282 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 ITPRIPL2Q3MIP1 535 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 C2orf27AQ580R0 203 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CRB2Q5IJ48 1285 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PNCKQ6P2M8 343 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 ENTHD1Q8IYW4 607 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PLA2G15Q8NCC3 412 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 TANKQ92844 425 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CDCA3Q99618 268 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 SORBS1Q9BX66 1292 aaKnown RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 OSGEPL1Q9H4B0 414 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 ENPP4Q9Y6X5 453 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 GCM2O75603 506 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PDE9AO76083 593 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CD36P16671 472 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 MVDP53602 400 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CDC42P60953 191 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 GPLD1P80108 840 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CEACAM20Q6UY09 585 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 IDO2Q6ZQW0 420 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 FAM124AQ86V42 546 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 HDDC3Q8N4P3 179 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PROX1Q92786 737 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 KLK6Q92876 244 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 UBE2FQ969M7 185 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 F2RL3Q96RI0 385 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 HDAC8Q9BY41 377 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 NEUROD4Q9HD90 331 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 GPATCH2Q9NW75 528 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 GMEB2Q9UKD1 530 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 RNF6Q9Y252 685 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 HCN4Q9Y3Q4 1203 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PCDHGA6Q9Y5G7 932 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PCDHGA2Q9Y5H1 932 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 DNMT3AQ9Y6K1 912 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PTPRSQ13332 1948 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 RAB19A4D1S5 217 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 IGLON5A6NGN9 336 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 INHBBP09529 407 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 M6PRP20645 277 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 DDCP20711 480 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ALDH4A1P30038 563 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 GRK3P35626 688 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 CLCNKAP51800 687 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 NUBP1P53384 320 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 CRYBA2P53672 197 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 CTF1Q16619 201 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 CYP27C1Q4G0S4 372 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 IQCCQ4KMZ1 466 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 VITQ6UXI7 678 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 SZRD1Q7Z422 152 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 RGMAQ96B86 450 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 RTCAO00442 366 aaKnown RBP9.16□□□□□ -0.94
COL6A3-204ENST00000392003 LINC01565O15544 149 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 OR1F1O43749 312 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 RHCEP18577 417 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 MASP1P48740 699 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 CDK3Q00526 305 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 MPEG1Q2M385 716 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ATAD3BQ5T9A4 648 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 TNFAIP8L2Q6P589 184 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-204ENST00000392003 NUDT13Q86X67 352 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 FAM129CQ86XR2 697 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 LINC00518Q8N0U6 118 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF565Q8N9K5 539 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 OR5H6Q8NGV6 325 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 OR10Z1Q8NGY1 313 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 OR5K2Q8NHB8 316 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 EXOSC8Q96B26 276 aaKnown RBP9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ZHX1-C8orf76Q96EF9 292 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ZBED6CLQ96FA7 236 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-204ENST00000392003 C1QTNF7Q9BXJ2 289 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 MS4A8Q9BY19 250 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ITPAQ9BY32 194 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 TMEM245Q9H330 911 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 STMN3Q9NZ72 180 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 TAAR2Q9P1P5 351 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 ICKQ9UPZ9 632 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 STON1Q9Y6Q2 735 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 NOTCH4Q99466 2003 aa9.16□□□□□ -0.94
COL6A3-204ENST00000392003 H7BY64 318 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 KPNA4O00629 521 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 PLPP1O14494 284 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 TOR1BO14657 336 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 MID1O15344 667 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 WBP4O75554 376 aaKnown RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 EIF2S1P05198 315 aaKnown RBP9.15□□□□□ -0.94
COL6A3-204ENST00000392003 GPC1P35052 558 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 OPRL1P41146 370 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 CTSKP43235 329 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 SOX9P48436 509 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 VBP1P61758 197 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 HSPB3Q12988 150 aa9.15□□□□□ -0.94
COL6A3-204ENST00000392003 DENND6BQ8NEG7 585 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms