RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CAPZBP47756 277 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 LIMK2P53671 638 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 C9orf135Q5VTT2 229 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PAPD7Q5XG87 772 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 HBMQ6B0K9 141 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 GALNT5Q7Z7M9 940 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 C10orf107Q8IVU9 208 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PHF10Q8WUB8 498 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 ATG4AQ8WYN0 398 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PDXPQ96GD0 296 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 OSBPL11Q9BXB4 747 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 NKX2-8O15522 239 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PLRG1O43660 514 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 ENPP1P22413 925 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 EIF1P41567 113 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 IRX1P78414 480 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 RELBQ01201 579 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 KCNAB1Q14722 419 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 HFEQ30201 348 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 DEFB121Q5J5C9 76 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF648Q5T619 568 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 NPNTQ6UXI9 565 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 CPEB2Q7Z5Q1 589 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 BAHD1Q8TBE0 780 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 IL17FQ96PD4 163 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 OR51B6Q9H340 312 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 SLC40A1Q9NP59 571 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 IL1RAPQ9NPH3 570 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 TMLHEQ9NVH6 421 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 SCN3BQ9NY72 215 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PLEKHM1Q9Y4G2 1056 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PRAMEF33A0A0G2JMD5 474 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PRAMEF10O60809 474 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 UBTFL6P0CB48 400 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 C7P10643 843 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 GABRA2P47869 451 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 EPHA5P54756 1037 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 UGT2B15P54855 530 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PPP2CBP62714 309 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PPP2CAP67775 309 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 MYBPC3Q14896 1274 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 TRIM71Q2Q1W2 868 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 TMEM92Q6UXU6 159 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 LRRC55Q6ZSA7 311 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 BBS12Q6ZW61 710 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 LRP10Q7Z4F1 713 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 ZZZ3Q8IYH5 903 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 DND1Q8IYX4 353 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 RASGEF1CQ8N431 466 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 OR52J3Q8NH60 311 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 ATXN10Q9UBB4 475 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 PPM1HQ9ULR3 514 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 LOC102725191A0A1B0GVB3 256 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 SLC5A10A0PJK1 596 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 NUAK1O60285 661 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 APEHP13798 732 aaKnown RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 INCA1Q0VD86 236 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 SPIN4Q56A73 249 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 C11orf63Q6NUN7 778 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 BNC2Q6ZN30 1099 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 C16orf47Q6ZP98 133 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-203ENST00000341423 C22orf15Q8WYQ4 148 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 MARVELD3Q96A59 401 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 LRRC19Q9H756 370 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 ELOVL3Q9HB03 270 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 MYOM1P52179 1685 aa7.97□□□□□ -1.13
HMGB1-203ENST00000341423 NBASA2RRP1 2371 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 POM121BA6NF01 834 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 EPOPA6NHQ4 379 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 OR10H3O60404 316 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 PTGIRP43119 386 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 MEOX1P50221 254 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 DPYSL3Q14195 570 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 TMEM52BQ4KMG9 183 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 LCN1P1Q5VSP4 162 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 NANOGP8Q6NSW7 305 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 UMODL1-AS1Q8N2C9 162 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 PYROXD2Q8N2H3 581 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 OR13C4Q8NGS5 318 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 MOAP1Q96BY2 351 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 NUDT22Q9BRQ3 303 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 PINK1Q9BXM7 581 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 HS3ST2Q9Y278 367 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 A0A1W2PRB8 838 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 CHRM5P08912 532 aaPredicted RBP7.96□□□□□ -1.13
HMGB1-203ENST00000341423 PRPS2P11908 318 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 POU3F3P20264 500 aaPredicted RBP7.96□□□□□ -1.13
HMGB1-203ENST00000341423 MVB12AQ96EY5 273 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 LRFN5Q96NI6 719 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 MICU1Q9BPX6 476 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 WDR45Q9Y484 360 aa7.96□□□□□ -1.13
HMGB1-203ENST00000341423 C2CD4BA6NLJ0 364 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 CCL22O00626 93 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 KLK1P06870 262 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 ELAVL4P26378 380 aaKnown RBP7.96□□□□□ -1.14
HMGB1-203ENST00000341423 RGRP47804 291 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 SCN1BQ07699 218 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 C2orf54Q08AI8 447 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 CCDC142Q17RM4 750 aa7.96□□□□□ -1.14
HMGB1-203ENST00000341423 GJC3Q8NFK1 279 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms