RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SLC6A8P48029 635 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 ZNF84P51523 738 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TMEM225Q6GV28 225 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 CXXC5Q7LFL8 322 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 OR7A2PQ8NGA2 310 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 OR9A4Q8NGU2 314 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 APIPQ96GX9 242 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 ZNF570Q96NI8 536 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 OR1F2PQ96R84 312 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 CTRCQ99895 268 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 A0A087WXM4 84 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 A0A0G2JPF8 293 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TARM1B6A8C7 271 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 HNRNPCL3B7ZW38 293 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 RNF13O43567 381 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 EEDO75530 441 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 HOXC4P09017 264 aaPredicted RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 HNRNPCL4P0DMR1 293 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TRAM2Q15035 370 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TLR1Q15399 786 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 EXT1Q16394 746 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 NNATQ16517 81 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 LRIF1Q5T3J3 769 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SMARCD3Q6STE5 483 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TMEM92Q6UXU6 159 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 PIGWQ7Z7B1 504 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 PROKR2Q8NFJ6 384 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 OR4C15Q8NGM1 316 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 OR52P1PQ8NH57 321 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TSEN15Q8WW01 171 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 PYURFQ96I23 114 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 NPLQ9BXD5 320 aaPredicted RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 COMMD4Q9H0A8 199 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SACM1LQ9NTJ5 587 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TOR4AQ9NXH8 423 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 M0QX08 132 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SDHDO14521 159 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 FARS2O95363 451 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 CKMT2P17540 419 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SLC6A6P31641 620 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 DNAJA1P31689 397 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 DNASE1L1P49184 302 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 KRR1Q13601 381 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 DENND5AQ6IQ26 1287 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SHISA6Q6ZSJ9 500 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 OR10G2Q8NGC3 310 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 RAB8BQ92930 207 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 ZNF578Q96N58 590 aaPredicted RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 EVA1AQ9H8M9 152 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 RNPEPL1Q9HAU8 725 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 ATP13A2Q9NQ11 1180 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TBC1D29Q9UFV1 150 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 PPM1BO75688 479 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 CYB5AP00167 134 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 RPS9P46781 194 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 SH3BP2P78314 561 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 BNIP1Q12981 228 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TRA2AQ13595 282 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP54-201ENST00000339859 CBFBQ13951 182 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 GRB7Q14451 532 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 PQLC1Q8N2U9 271 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 HS6ST2Q96MM7 605 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 MCHR1Q99705 422 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 C11orf16Q9NQ32 467 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SPHK1Q9NYA1 384 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 PTBP2Q9UKA9 531 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 SLC17A4Q9Y2C5 497 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 ZNF749O43361 778 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CLPTM1O96005 669 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 OPN1SWP03999 348 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 HIST1H1TP22492 207 aaPredicted RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 MSX2P35548 267 aaPredicted RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 OR1D4P47884 311 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 SELENOVP59797 346 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 EIF3IQ13347 325 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 UGT3A2Q3SY77 523 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CYBRD1Q53TN4 286 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 LETMD1Q6P1Q0 360 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 FRS2Q8WU20 508 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 RELTQ969Z4 430 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 MRGPRX3Q96LB0 322 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CCDC74BQ96LY2 380 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CCNL2Q96S94 520 aaPredicted RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 ZNF184Q99676 751 aaPredicted RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 CTPS2Q9NRF8 586 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 NKIRAS2Q9NYR9 191 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CSNK1G3Q9Y6M4 447 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 A0A0G2JMZ2 1700 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 LRRC37A2A6NM11 1700 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 VILLO15195 856 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 NOBOXO60393 691 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 SHOX2O60902 331 aaPredicted RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 TNFSF15O95150 251 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 FGF4P08620 206 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 IMPA1P29218 277 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 PGGT1BP53609 377 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 TNFRSF17Q02223 184 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CD47Q08722 323 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 PPP1R3AQ16821 1122 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 APLFQ8IW19 511 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms