RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ARFGEF1Q9Y6D6 1849 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CHURC1-FNTBB4DL54 471 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PPP6CO00743 305 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 BCHEP06276 602 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 GPX3P22352 226 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CXCR1P25024 350 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 GPR68Q15743 365 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CLPPQ16740 277 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 AGBL4Q5VU57 503 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 OPN5Q6U736 354 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HSDL2Q6YN16 418 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 NANOGNBQ7Z5D8 188 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM151BQ8IW70 566 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ADAMTS19Q8TE59 1207 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RAB8BQ92930 207 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 NPLQ9BXD5 320 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HMG20AQ9NP66 347 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SACM1LQ9NTJ5 587 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RHBDL2Q9NX52 303 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 VAPAQ9P0L0 249 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 B4GALT7Q9UBV7 327 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 KLF15Q9UIH9 416 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CNOT11Q9UKZ1 510 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SARDHQ9UL12 918 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PCDHA9Q9Y5H5 950 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF821O75541 412 aaPredicted RBP6.52□□□□□ -1.36
SF3B1-201ENST00000335508 CEACAM5P06731 702 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 LYNP07948 512 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 ETS2P15036 469 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 XCR1P46094 333 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 GSSP48637 474 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 DGUOKQ16854 277 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 KLHL26Q53HC5 615 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 LCN1P1Q5VSP4 162 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 CPZQ66K79 652 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 LSMEM2Q8N112 164 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 NUP43Q8NFH3 380 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 TM9SF4Q92544 642 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 EFHD2Q96C19 240 aaPredicted RBP6.52□□□□□ -1.36
SF3B1-201ENST00000335508 OR52A5Q9H2C5 316 aa6.52□□□□□ -1.36
SF3B1-201ENST00000335508 H0YGG7 62 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 SYT5O00445 386 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 H6PDO95479 791 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 GBAP04062 536 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PABPC4LP0CB38 370 aaKnown RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 BMP2P12643 396 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ICAM2P13598 275 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 NME1P15531 152 aaKnown RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PGCP20142 388 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MAOBP27338 520 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PGGT1BP53609 377 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ARF3P61204 181 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 FAM53BQ14153 422 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 INAQ16352 499 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 LEXMQ3ZCV2 418 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 RUNDC3AQ59EK9 446 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF648Q5T619 568 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 RNF130Q86XS8 419 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MIEF2Q96C03 454 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 EGLN2Q96KS0 407 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 IP6K3Q96PC2 410 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ACTRT3Q9BYD9 372 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 NLGN3Q9NZ94 848 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MAN2B2Q9Y2E5 1009 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 C2CD4DB7Z1M9 353 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 HPRP00739 348 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 FBLP22087 321 aaKnown RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 BCL6P41182 706 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 CSNK1G2P78368 415 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 REEP5Q00765 189 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 SIGLEC14Q08ET2 396 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PON3Q15166 354 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 SLC5A12Q1EHB4 618 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 RNF165Q6ZSG1 346 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 LAS2Q8IYD9 372 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MYEOVQ96EZ4 313 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ARMC1Q9NVT9 282 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MAT2BQ9NZL9 334 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PADI1Q9ULC6 663 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 COMMD3-BMI1R4GMX3 469 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 HSPE1-MOB4S4R3N1 261 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 CENPBD1B2RD01 187 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 H0YAE9 185 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MT-ND1P03886 318 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 CDK4P11802 303 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 GP1BBP13224 206 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 RHCEP18577 417 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 TACR1P25103 407 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 SMSP52788 366 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 TARDBPQ13148 414 aaKnown RBP eCLIP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 NEDD8Q15843 81 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 FAM189A2Q15884 450 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PIP5KL1Q5T9C9 394 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 DNAJC5GQ8N7S2 189 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 NAT14Q8WUY8 206 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 APIPQ96GX9 242 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF578Q96N58 590 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 C6orf106Q9H6K1 298 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 EXO5Q9H790 373 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms