RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 COLEC12Q5KU26 742 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 C6orf136Q5SQH8 315 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 C6orf163Q5TEZ5 329 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 H3F3CQ6NXT2 135 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 IKBIPQ70UQ0 350 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 HPS6Q86YV9 775 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 CRLF3Q8IUI8 442 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 SLC5A8Q8N695 610 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 OR1N1Q8NGS0 311 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 GFM2Q969S9 779 aaKnown RBP14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 EGLN2Q96KS0 407 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 ART5Q96L15 291 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 ZNF354BQ96LW1 612 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 CNPPD1Q9BV87 410 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 MFRPQ9BY79 579 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 GIMAP4Q9NUV9 329 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 COPS7AQ9UBW8 275 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 BAIAP2L1Q9UHR4 511 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 ZNF223Q9UK11 482 aaPredicted RBP14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 ENTPD4Q9Y227 616 aa14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 WBP11Q9Y2W2 641 aaKnown RBP14.81□□□□□ -0.04
CCDC28A-201ENST00000332797 BSNQ9UPA5 3926 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 TLN1Q9Y490 2541 aaKnown RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 HRKO00198 91 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 C1QL1O75973 258 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 LRATO95237 230 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 BCKDHAP12694 445 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 CSNK2A2P19784 350 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 NT5EP21589 574 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 PTGER1P34995 402 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 CD97P48960 835 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 ERVK-8P63133 956 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 DUSP2Q05923 314 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 ZNF267Q14586 743 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 SPRED3Q2MJR0 410 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 ACER2Q5QJU3 275 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 TICAM1Q8IUC6 712 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 GALNT12Q8IXK2 581 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 LRRC25Q8N386 305 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 LIX1Q8N485 282 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 ZADH2Q8N4Q0 377 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 TEX19Q8NA77 164 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 ZNF721Q8TF20 911 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 THAP3Q8WTV1 239 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 CNRIP1Q96F85 164 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 SENP5Q96HI0 755 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 FBXL20Q96IG2 436 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 LMF1Q96S06 567 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 NPAS2Q99743 824 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 CDCP1Q9H5V8 836 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 AKTIPQ9H8T0 292 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 MEAF6Q9HAF1 191 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 EHD3Q9NZN3 535 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 ERVK-19Q9WJR5 959 aa14.8□□□□□ -0.04
CCDC28A-201ENST00000332797 HDAC3O15379 428 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 AKAP10O43572 662 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 MAN1A2O60476 641 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 F10P00742 488 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 GALNSP34059 522 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 ARG2P78540 354 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 KLRB1Q12918 225 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 MEP1AQ16819 746 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 NADK2Q4G0N4 442 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 IL23RQ5VWK5 629 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 IGFL2Q6UWQ7 119 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 IGFL3Q6UXB1 125 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 HSDL2Q6YN16 418 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 RPS19BP1Q86WX3 136 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 BEST3Q8N1M1 668 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 RBMXL3Q8N7X1 1067 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 CXorf21Q9HAI6 301 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 SLC35C2Q9NQQ7 365 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 PLA2G3Q9NZ20 509 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 STMN3Q9NZ72 180 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 ABI3Q9P2A4 366 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 EXO1Q9UQ84 846 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 EIF3LQ9Y262 564 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 CPAMD8Q8IZJ3 1885 aa14.79□□□□□ -0.04
CCDC28A-201ENST00000332797 DYTNA2CJ06 578 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ATP8B1O43520 1251 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 PRKNO60260 465 aaPredicted RBP14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ZFAND5O76080 213 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ATP1B1P05026 303 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 CT62P0C5K7 136 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ASMTP46597 345 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ST13P50502 369 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 MAD2L1Q13257 205 aaPredicted RBP14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 PRSS53Q2L4Q9 553 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 WDR75Q8IWA0 830 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 SAMD14Q8IZD0 417 aaPredicted RBP14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ZNF843Q8N446 348 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ADCY4Q8NFM4 1077 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 PIWIL2Q8TC59 973 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 C7orf26Q96N11 449 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 ZNF681Q96N22 645 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 BBS4Q96RK4 519 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 BRINP2Q9C0B6 783 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 SLCO1B3Q9NPD5 702 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 MED4Q9NPJ6 270 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms