RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Phf11aQ8BVM9 293 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Znf385bQ8BXJ8 482 aaKnown RBP8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Pgm2l1Q8CAA7 621 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Vmn1r89Q8R256 316 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Olfr677Q8VF06 312 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Olfr1390Q8VGW9 311 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Vmn1r85Q8VIB8 308 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Q9D4G1 230 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Il17bQ9QXT6 180 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Dbf4Q9QZ41 663 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Cib1Q9Z0F4 191 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Zfp993A2A8V4 313 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Gm595A2AF73 655 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Zfp992B1ASD8 573 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Ptrhd1D3Z4S3 140 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Arg2O08691 354 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Nipsnap2O55126 281 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 ApoeP08226 311 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Klk1b9P15949 261 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Cdx2P43241 311 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Vipr1P97751 459 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Prss48Q14B25 312 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 H2-Eb2Q3UUV9 287 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Ankrd37Q569N2 159 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Mea1Q64327 174 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Kyat3Q71RI9 455 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 E330021D16RikQ8BW45 371 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Vps50Q8CI71 964 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Zfp991Q8R1N3 573 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Mgat2Q921V5 442 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Chid1Q922Q9 393 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Dnase1l2Q9D1G0 278 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Tomm20lQ9D4V6 152 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Pbld1Q9DCG6 288 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Nacc2Q9DCM7 586 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Kcnj10Q9JM63 379 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Rdh11Q9QYF1 316 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Tagln3Q9R1Q8 199 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Lrp4Q8VI56 1905 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 1700028J19RikA0A0U1RP08 172 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 FcmrA1KXC4 422 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 CK137956B1AYM9 596 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Gm6569D3YTM9 175 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Prr36E9PV26 1098 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Catsperg1E9Q355 1151 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Vmn2r105E9Q3A5 860 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Gm21976J3QNN2 249 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Slc6a6O35316 621 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Npc1O35604 1277 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 HccsP53702 272 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Fgf1P61148 155 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 PtnP63089 168 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Sorbs2Q3UTJ2 1180 aaKnown RBP8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Cdh12Q5RJH3 794 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Gpalpp1Q69ZC8 346 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Mapre3Q6PER3 281 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Zcchc3Q8BPK2 400 aaKnown RBP8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 MaobQ8BW75 520 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Wfikkn1Q8R0S6 552 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Batf2Q8R1H8 277 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 MrrfQ9D6S7 262 aaKnown RBP8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 ApmapQ9D7N9 415 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Lrrc34Q9DAM1 415 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Acot2Q9QYR9 453 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Sema4gQ9WUH7 837 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Cldn6Q9Z262 219 aa8.23□□□□□ -1.09
Trim39-201ENSMUST00000042717 Ice1E9Q286 2241 aaKnown RBP8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 5430403G16RikD3Z5L4 667 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 5430401F13RikE9Q328 175 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Vmn2r13L7N1X2 831 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Prl4a1O35256 227 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Sema6aO35464 1031 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Dnmt3bO88509 859 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Slc22a8O88909 537 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Il2raP01590 268 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Sstr3P30935 428 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Slc19a1P41438 512 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Adra1aP97718 466 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Q3TTL0 348 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Dhrs11Q3U0B3 260 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Pak6Q3ULB5 682 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Cnrip1Q5M8N0 164 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Ifit3Q64345 403 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Nqo1Q64669 274 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Slc25a40Q8BGP6 337 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Psd4Q8BLR5 1005 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Gpr157Q8C206 330 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Nkiras1Q8CEC5 192 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Aoc1Q8JZQ5 751 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 ManbaQ8K2I4 879 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Kctd11Q8K485 232 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Mcoln3Q8R4F0 553 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Olfr599Q8VG01 315 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Ucn3Q924A4 164 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Col25a1Q99MQ5 666 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Trim16Q99PP9 556 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Acbd7Q9D258 88 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 AcoxlQ9DBS4 632 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Slco2a1Q9EPT5 643 aa8.22□□□□□ -1.09
Trim39-201ENSMUST00000042717 Kat2aQ9JHD2 830 aa8.22□□□□□ -1.09
Retrieved 100 of 22,080 RNA–protein pairs in 28.2 ms