Protein–RNA interactions for Protein: Q99MQ5

Col25a1, Collagen alpha-1(XXV) chain, mousemouse

Predictions only

Length 666 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col25a1Q99MQ5 Gm25239-201ENSMUST00000174915 86 ntBASIC42.01■■■■■ 4.32
Col25a1Q99MQ5 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
Col25a1Q99MQ5 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
Col25a1Q99MQ5 Gm24109-201ENSMUST00000175489 103 ntBASIC37.11■■■■□ 3.53
Col25a1Q99MQ5 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
Col25a1Q99MQ5 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.56■■■■□ 3.28
Col25a1Q99MQ5 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Col25a1Q99MQ5 Gm15042-201ENSMUST00000120212 883 ntBASIC35.51■■■■□ 3.28
Col25a1Q99MQ5 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.01■■■■□ 3.2
Col25a1Q99MQ5 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
Col25a1Q99MQ5 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
Col25a1Q99MQ5 Gm23366-201ENSMUST00000175022 89 ntBASIC34.92■■■■□ 3.18
Col25a1Q99MQ5 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
Col25a1Q99MQ5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.77■■■■□ 3.16
Col25a1Q99MQ5 Gm15045-201ENSMUST00000117359 883 ntBASIC34.49■■■■□ 3.11
Col25a1Q99MQ5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.42■■■■□ 3.1
Col25a1Q99MQ5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Col25a1Q99MQ5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.7■■■□□ 2.99
Col25a1Q99MQ5 Gm25238-201ENSMUST00000174914 89 ntBASIC33.56■■■□□ 2.96
Col25a1Q99MQ5 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
Col25a1Q99MQ5 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Col25a1Q99MQ5 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.06■■■□□ 2.88
Col25a1Q99MQ5 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.96■■■□□ 2.87
Col25a1Q99MQ5 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Col25a1Q99MQ5 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Col25a1Q99MQ5 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.81■■■□□ 2.84
Col25a1Q99MQ5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.81■■■□□ 2.84
Col25a1Q99MQ5 Gm25262-201ENSMUST00000174934 133 ntBASIC32.78■■■□□ 2.84
Col25a1Q99MQ5 Gm26115-201ENSMUST00000175605 87 ntBASIC32.49■■■□□ 2.79
Col25a1Q99MQ5 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.4■■■□□ 2.78
Col25a1Q99MQ5 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.38■■■□□ 2.77
Col25a1Q99MQ5 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.26■■■□□ 2.75
Col25a1Q99MQ5 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
Col25a1Q99MQ5 Gm8109-201ENSMUST00000194076 746 ntBASIC32.13■■■□□ 2.73
Col25a1Q99MQ5 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.11■■■□□ 2.73
Col25a1Q99MQ5 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.9■■■□□ 2.7
Col25a1Q99MQ5 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Col25a1Q99MQ5 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Col25a1Q99MQ5 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
Col25a1Q99MQ5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.67■■■□□ 2.66
Col25a1Q99MQ5 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.63■■■□□ 2.65
Col25a1Q99MQ5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col25a1Q99MQ5 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col25a1Q99MQ5 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.23■■■□□ 2.59
Col25a1Q99MQ5 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Col25a1Q99MQ5 Rab21-202ENSMUST00000218831 843 ntBASIC31.14■■■□□ 2.58
Col25a1Q99MQ5 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Col25a1Q99MQ5 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Col25a1Q99MQ5 Gm24804-201ENSMUST00000174982 85 ntBASIC30.93■■■□□ 2.54
Col25a1Q99MQ5 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.93■■■□□ 2.54
Col25a1Q99MQ5 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Col25a1Q99MQ5 Gm27325-201ENSMUST00000175467 74 ntBASIC30.88■■■□□ 2.53
Col25a1Q99MQ5 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Col25a1Q99MQ5 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Col25a1Q99MQ5 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Col25a1Q99MQ5 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.79■■■□□ 2.52
Col25a1Q99MQ5 Psd-208ENSMUST00000224556 2034 ntBASIC30.77■■■□□ 2.52
Col25a1Q99MQ5 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.75■■■□□ 2.51
Col25a1Q99MQ5 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col25a1Q99MQ5 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
Col25a1Q99MQ5 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.6■■■□□ 2.49
Col25a1Q99MQ5 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col25a1Q99MQ5 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Col25a1Q99MQ5 Zfp131-205ENSMUST00000223812 663 ntBASIC30.55■■■□□ 2.48
Col25a1Q99MQ5 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col25a1Q99MQ5 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Col25a1Q99MQ5 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col25a1Q99MQ5 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.37■■■□□ 2.45
Col25a1Q99MQ5 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.35■■■□□ 2.45
Col25a1Q99MQ5 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Col25a1Q99MQ5 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Col25a1Q99MQ5 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.28■■■□□ 2.44
Col25a1Q99MQ5 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
Col25a1Q99MQ5 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Col25a1Q99MQ5 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Col25a1Q99MQ5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Col25a1Q99MQ5 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
Col25a1Q99MQ5 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30■■■□□ 2.39
Col25a1Q99MQ5 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Col25a1Q99MQ5 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
Col25a1Q99MQ5 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Col25a1Q99MQ5 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Col25a1Q99MQ5 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Col25a1Q99MQ5 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC29.95■■■□□ 2.39
Col25a1Q99MQ5 Gm27322-201ENSMUST00000184007 104 ntBASIC29.94■■■□□ 2.38
Col25a1Q99MQ5 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Col25a1Q99MQ5 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC29.92■■■□□ 2.38
Col25a1Q99MQ5 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29.91■■■□□ 2.38
Col25a1Q99MQ5 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Col25a1Q99MQ5 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Col25a1Q99MQ5 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Col25a1Q99MQ5 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Col25a1Q99MQ5 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Col25a1Q99MQ5 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Col25a1Q99MQ5 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.77■■■□□ 2.36
Col25a1Q99MQ5 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.77■■■□□ 2.36
Col25a1Q99MQ5 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
Col25a1Q99MQ5 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.75■■■□□ 2.35
Col25a1Q99MQ5 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.35
Col25a1Q99MQ5 Gm5987-201ENSMUST00000196433 1151 ntBASIC29.69■■■□□ 2.34
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms