Protein–RNA interactions for Protein: Q99MQ5

Col25a1, Collagen alpha-1(XXV) chain, mousemouse

Predictions only

Length 666 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col25a1Q99MQ5 Gm25239-201ENSMUST00000174915 86 ntBASIC42,01■■■■■ 4,32
Col25a1Q99MQ5 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39,44■■■■□ 3,9
Col25a1Q99MQ5 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38,73■■■■□ 3,79
Col25a1Q99MQ5 Gm24109-201ENSMUST00000175489 103 ntBASIC37,11■■■■□ 3,53
Col25a1Q99MQ5 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35,77■■■■□ 3,32
Col25a1Q99MQ5 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35,56■■■■□ 3,28
Col25a1Q99MQ5 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35,53■■■■□ 3,28
Col25a1Q99MQ5 Gm15042-201ENSMUST00000120212 883 ntBASIC35,51■■■■□ 3,28
Col25a1Q99MQ5 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35,01■■■■□ 3,2
Col25a1Q99MQ5 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34,97■■■■□ 3,19
Col25a1Q99MQ5 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34,97■■■■□ 3,19
Col25a1Q99MQ5 Gm23366-201ENSMUST00000175022 89 ntBASIC34,92■■■■□ 3,18
Col25a1Q99MQ5 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34,81■■■■□ 3,16
Col25a1Q99MQ5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34,77■■■■□ 3,16
Col25a1Q99MQ5 Gm15045-201ENSMUST00000117359 883 ntBASIC34,49■■■■□ 3,11
Col25a1Q99MQ5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34,42■■■■□ 3,1
Col25a1Q99MQ5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33,72■■■□□ 2,99
Col25a1Q99MQ5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33,7■■■□□ 2,99
Col25a1Q99MQ5 Gm25238-201ENSMUST00000174914 89 ntBASIC33,56■■■□□ 2,96
Col25a1Q99MQ5 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33,44■■■□□ 2,94
Col25a1Q99MQ5 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33,27■■■□□ 2,92
Col25a1Q99MQ5 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33,06■■■□□ 2,88
Col25a1Q99MQ5 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32,96■■■□□ 2,87
Col25a1Q99MQ5 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32,93■■■□□ 2,86
Col25a1Q99MQ5 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32,91■■■□□ 2,86
Col25a1Q99MQ5 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32,81■■■□□ 2,84
Col25a1Q99MQ5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32,81■■■□□ 2,84
Col25a1Q99MQ5 Gm25262-201ENSMUST00000174934 133 ntBASIC32,78■■■□□ 2,84
Col25a1Q99MQ5 Gm26115-201ENSMUST00000175605 87 ntBASIC32,49■■■□□ 2,79
Col25a1Q99MQ5 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32,4■■■□□ 2,78
Col25a1Q99MQ5 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32,38■■■□□ 2,77
Col25a1Q99MQ5 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32,26■■■□□ 2,75
Col25a1Q99MQ5 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32,13■■■□□ 2,73
Col25a1Q99MQ5 Gm8109-201ENSMUST00000194076 746 ntBASIC32,13■■■□□ 2,73
Col25a1Q99MQ5 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32,11■■■□□ 2,73
Col25a1Q99MQ5 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31,9■■■□□ 2,7
Col25a1Q99MQ5 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31,85■■■□□ 2,69
Col25a1Q99MQ5 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31,82■■■□□ 2,68
Col25a1Q99MQ5 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31,82■■■□□ 2,68
Col25a1Q99MQ5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31,67■■■□□ 2,66
Col25a1Q99MQ5 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31,63■■■□□ 2,65
Col25a1Q99MQ5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31,5■■■□□ 2,63
Col25a1Q99MQ5 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31,28■■■□□ 2,6
Col25a1Q99MQ5 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31,23■■■□□ 2,59
Col25a1Q99MQ5 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31,19■■■□□ 2,58
Col25a1Q99MQ5 Rab21-202ENSMUST00000218831 843 ntBASIC31,14■■■□□ 2,58
Col25a1Q99MQ5 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31,1■■■□□ 2,57
Col25a1Q99MQ5 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31,05■■■□□ 2,56
Col25a1Q99MQ5 Gm24804-201ENSMUST00000174982 85 ntBASIC30,93■■■□□ 2,54
Col25a1Q99MQ5 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30,93■■■□□ 2,54
Col25a1Q99MQ5 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30,92■■■□□ 2,54
Col25a1Q99MQ5 Gm27325-201ENSMUST00000175467 74 ntBASIC30,88■■■□□ 2,53
Col25a1Q99MQ5 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC30,85■■■□□ 2,53
Col25a1Q99MQ5 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30,81■■■□□ 2,52
Col25a1Q99MQ5 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30,79■■■□□ 2,52
Col25a1Q99MQ5 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30,79■■■□□ 2,52
Col25a1Q99MQ5 Psd-208ENSMUST00000224556 2034 ntBASIC30,77■■■□□ 2,52
Col25a1Q99MQ5 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30,75■■■□□ 2,51
Col25a1Q99MQ5 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30,67■■■□□ 2,5
Col25a1Q99MQ5 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30,63■■■□□ 2,49
Col25a1Q99MQ5 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30,6■■■□□ 2,49
Col25a1Q99MQ5 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30,56■■■□□ 2,48
Col25a1Q99MQ5 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30,55■■■□□ 2,48
Col25a1Q99MQ5 Zfp131-205ENSMUST00000223812 663 ntBASIC30,55■■■□□ 2,48
Col25a1Q99MQ5 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30,46■■■□□ 2,47
Col25a1Q99MQ5 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30,41■■■□□ 2,46
Col25a1Q99MQ5 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30,4■■■□□ 2,46
Col25a1Q99MQ5 Gm17082-201ENSMUST00000166043 1091 ntBASIC30,37■■■□□ 2,45
Col25a1Q99MQ5 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30,35■■■□□ 2,45
Col25a1Q99MQ5 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30,34■■■□□ 2,45
Col25a1Q99MQ5 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30,29■■■□□ 2,44
Col25a1Q99MQ5 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30,28■■■□□ 2,44
Col25a1Q99MQ5 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30,26■■■□□ 2,43
Col25a1Q99MQ5 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30,2■■■□□ 2,42
Col25a1Q99MQ5 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30,07■■■□□ 2,4
Col25a1Q99MQ5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30,05■■■□□ 2,4
Col25a1Q99MQ5 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30,01■■■□□ 2,39
Col25a1Q99MQ5 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30■■■□□ 2,39
Col25a1Q99MQ5 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29,99■■■□□ 2,39
Col25a1Q99MQ5 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29,99■■■□□ 2,39
Col25a1Q99MQ5 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29,97■■■□□ 2,39
Col25a1Q99MQ5 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29,96■■■□□ 2,39
Col25a1Q99MQ5 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29,96■■■□□ 2,39
Col25a1Q99MQ5 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC29,95■■■□□ 2,39
Col25a1Q99MQ5 Gm27322-201ENSMUST00000184007 104 ntBASIC29,94■■■□□ 2,38
Col25a1Q99MQ5 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29,94■■■□□ 2,38
Col25a1Q99MQ5 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC29,92■■■□□ 2,38
Col25a1Q99MQ5 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29,91■■■□□ 2,38
Col25a1Q99MQ5 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29,91■■■□□ 2,38
Col25a1Q99MQ5 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29,86■■■□□ 2,37
Col25a1Q99MQ5 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29,82■■■□□ 2,36
Col25a1Q99MQ5 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29,81■■■□□ 2,36
Col25a1Q99MQ5 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29,8■■■□□ 2,36
Col25a1Q99MQ5 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29,77■■■□□ 2,36
Col25a1Q99MQ5 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29,77■■■□□ 2,36
Col25a1Q99MQ5 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29,77■■■□□ 2,36
Col25a1Q99MQ5 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29,77■■■□□ 2,36
Col25a1Q99MQ5 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29,75■■■□□ 2,35
Col25a1Q99MQ5 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29,7■■■□□ 2,35
Col25a1Q99MQ5 Gm5987-201ENSMUST00000196433 1151 ntBASIC29,69■■■□□ 2,34
Retrieved 100 of 76,532 protein–RNA pairs in 10,4 ms