RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 C16orf58Q96GQ5 468 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 CCM2Q9BSQ5 444 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 NAA11Q9BSU3 229 aaPredicted RBP1.62□□□□□ -2.15
SCN1A-208ENST00000625916 SLC25A23Q9BV35 468 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 RABEP2Q9H5N1 569 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 IL1RL2Q9HB29 575 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 SNX7Q9UNH6 387 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 PTCH1Q13635 1447 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 TRABD2BA6NFA1 517 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 FLRT2O43155 660 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 OR6A2O95222 327 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 CCDC175P0C221 793 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 KRT3P12035 628 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 FUT3P21217 361 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 SRD5A2P31213 254 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 DIO3P55073 304 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 ABRQ12979 859 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 TNK1Q13470 666 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 GPR50Q13585 617 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 RALBP1Q15311 655 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 SGCBQ16585 318 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 UGCGQ16739 394 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 KCTD19Q17RG1 926 aaPredicted RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 IQCCQ4KMZ1 466 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 PAGE2BQ5JRK9 111 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 SLC22A10Q63ZE4 541 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 ALKBH5Q6P6C2 394 aaKnown RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 KRT74Q7RTS7 529 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 PHLDB2Q86SQ0 1253 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF433Q8N7K0 673 aaPredicted RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 TMEM99Q8N816 258 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 VPS33AQ96AX1 596 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 PIWIL1Q96J94 861 aaKnown RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 TNMDQ9H2S6 317 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 HPS4Q9NQG7 708 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 ANKEF1Q9NU02 776 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 TAS2R16Q9NYV7 291 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 EIF3KQ9UBQ5 218 aaKnown RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 APOBEC3BQ9UH17 382 aaKnown RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 NOCTQ9UK39 431 aaKnown RBP1.61□□□□□ -2.15
SCN1A-208ENST00000625916 LIPGQ9Y5X9 500 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 MYO10Q9HD67 2058 aa1.61□□□□□ -2.15
SCN1A-208ENST00000625916 IGLV8-61A0A075B6I0 122 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 CCDC162PA2VCL2 907 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 TSPY2A6NKD2 308 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 A8MXE2 369 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 UBE2CO00762 179 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 TBX10O75333 385 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 GRAP2O75791 330 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 PGLSO95336 258 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 SNRPCP09234 159 aaKnown RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 RAD52P43351 418 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 PPP5CP53041 499 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 MFAP2P55001 183 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 CETN1Q12798 172 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 SERTAD2Q14140 314 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 KYAT1Q16773 422 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 HYAL4Q2M3T9 481 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 KRBOX4Q5JUW0 171 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 SPOUT1Q5T280 376 aaKnown RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 LYPLAL1Q5VWZ2 237 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 FAM219BQ5XKK7 198 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 WDR25Q64LD2 544 aaPredicted RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 SLC30A6Q6NXT4 461 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 ERN2Q76MJ5 926 aaKnown RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 SPATA21Q7Z572 469 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF589Q86UQ0 364 aaPredicted RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 LAX1Q8IWV1 398 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 CCAR2Q8N163 923 aaKnown RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 LYPD1Q8N2G4 141 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 TPRX1Q8N7U7 411 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 IQUBQ8NA54 791 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 ICA1LQ8NDH6 482 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 TCP11Q8WWU5 503 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 CRYGNQ8WXF5 182 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 RAD54LQ92698 747 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 FAM129AQ9BZQ8 928 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 ANKRD2Q9GZV1 360 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 RNF41Q9H4P4 317 aaPredicted RBP1.6□□□□□ -2.15
SCN1A-208ENST00000625916 SEC14L4Q9UDX3 406 aa1.6□□□□□ -2.15
SCN1A-208ENST00000625916 ANXA2P2A6NMY6 339 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 PPIP5K2O43314 1243 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 CSO75390 466 aaKnown RBP1.59□□□□□ -2.15
SCN1A-208ENST00000625916 STBD1O95210 358 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 PDGFRAP16234 1089 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 NT5C2P49902 561 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 ORC2Q13416 577 aaPredicted RBP1.59□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF273Q14593 569 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 C16orf72Q14CZ0 275 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 TOMM20Q15388 145 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 CCDC186Q7Z3E2 898 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 ABI3BPQ7Z7G0 1075 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 TDHQ8IZJ6 230 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 SMYD1Q8NB12 490 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 RNF149Q8NC42 400 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 HEXDCQ8WVB3 486 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 SEPT8Q92599 483 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 RAB3CQ96E17 227 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 CNDP2Q96KP4 475 aaKnown RBP1.59□□□□□ -2.15
SCN1A-208ENST00000625916 ERGIC2Q96RQ1 377 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms