RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 GPR78Q96P69 363 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 CENPKQ9BS16 269 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ZNF717Q9BY31 904 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 DDX31Q9H8H2 851 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 ACTR8Q9H981 624 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 SH2D2AQ9NP31 389 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 SEMA4BQ9NPR2 832 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 SNX15Q9NRS6 342 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 PNPLA3Q9NST1 481 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 SACM1LQ9NTJ5 587 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 PSD3Q9NYI0 1048 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 PHF11Q9UIL8 331 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 RNF6Q9Y252 685 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 RNF11Q9Y3C5 154 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ASB4Q9Y574 426 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ANGPTL3Q9Y5C1 460 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 OTOGQ6ZRI0 2925 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 A0A096LPK6 155 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 A0A0A6YYD5 115 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 IQANK1A0A1B0GTG1 560 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ATP6AP2A0A1C7CYW4 349 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ESYT3A0FGR9 886 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 NKX2-6A6NCS4 301 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 GLOD5A6NK44 160 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 FOXE1O00358 373 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 AQP7O14520 342 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 BCKDKO14874 412 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 DYRK3O43781 588 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TMPRSS11DO60235 418 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ATP6AP2O75787 350 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 NADKO95544 446 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 GPR75O95800 540 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ALDOAP04075 364 aaKnown RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 CELA3AP09093 270 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 FAM58BPP0C7Q3 252 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 GFAPP14136 432 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ALOX15P16050 662 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 IGFBP2P18065 325 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ACVR2AP27037 513 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TYK2P29597 1187 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 PIGAP37287 484 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 BUD31P41223 144 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 NEK2P51955 445 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 NUP107P57740 925 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 PLIN5Q00G26 463 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TNFRSF17Q02223 184 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TLE4Q04727 773 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TFF3Q07654 80 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 CUL3Q13618 768 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 GTF2H2Q13888 395 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ZNF267Q14586 743 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 CPSF6Q16630 551 aaKnown RBP eCLIP7.03□□□□□ -1.28
CUX1-219ENST00000606749 RTL6Q6ICC9 239 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 GTF2H2CQ6P1K8 395 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 METTL2BQ6P1Q9 378 aaKnown RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 ZNF585AQ6P3V2 769 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 KLC3Q6P597 504 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ADGRD1Q6QNK2 874 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ACAD11Q709F0 780 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 GOLGA7Q7Z5G4 137 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ST13P4Q8IZP2 240 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 FAM109AQ8N4B1 249 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 L3MBTL4Q8NA19 623 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 OR5M9Q8NGP3 310 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 OR5M3Q8NGP4 307 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 WDR20Q8TBZ3 569 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 SLC22A8Q8TCC7 542 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 PAQR8Q8TEZ7 354 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 CHTF18Q8WVB6 975 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 RIT1Q92963 219 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 UCN3Q969E3 161 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 REPS1Q96D71 796 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 FBXL20Q96IG2 436 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ART5Q96L15 291 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 SMC6Q96SB8 1091 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TTYH2Q9BSA4 534 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 LRRC1Q9BTT6 524 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 LDAHQ9H6V9 325 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 IPPKQ9H8X2 491 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 PROK2Q9HC23 129 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 MCCC2Q9HCC0 563 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 KCNJ16Q9NPI9 418 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 NPDC1Q9NQX5 325 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 ZDHHC18Q9NUE0 388 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TUBA8Q9NY65 449 aaPredicted RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 TNFRSF10DQ9UBN6 386 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ITGB1BP2Q9UKP3 347 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ACAD8Q9UKU7 415 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 TNPO3Q9Y5L0 923 aaKnown RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 LIPGQ9Y5X9 500 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.03□□□□□ -1.28
CUX1-219ENST00000606749 CACNA1CQ13936 2221 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 ZNF407Q9C0G0 2248 aa7.03□□□□□ -1.28
CUX1-219ENST00000606749 CSMD1Q96PZ7 3565 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 TRGV5A0A0B4J1U4 118 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 FAM90A27PA6NNH2 459 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 OR7A17O14581 309 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 PGRMC2O15173 223 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 OR10H2O60403 315 aa7.02□□□□□ -1.29
CUX1-219ENST00000606749 HCN1O60741 890 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms