RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TMEM19Q96HH6 336 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF514Q96K75 400 aaPredicted RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 COX4I2Q96KJ9 171 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 HRASLS5Q96KN8 279 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ASB16Q96NS5 453 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 AIF1LQ9BQI0 150 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 MYNNQ9NPC7 610 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 NFKBIL1Q9UBC1 381 aaPredicted RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GPSM3Q9Y4H4 160 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PDPK1O15530 556 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SLC28A2O43868 658 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TMPRSS11DO60235 418 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 OR10H3O60404 316 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 CCNB2O95067 398 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 FUCA1P04066 466 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 IFNW1P05000 195 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 CHRM5P08912 532 aaPredicted RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 OR12D1P0DN82 309 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 RPS2P15880 293 aaKnown RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 JUNDP17535 347 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PTNP21246 168 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TIE1P35590 1138 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ATP6V1E1P36543 226 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SSR2P43308 183 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ST3GAL4Q11206 333 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GPM6BQ13491 265 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PTGES3Q15185 160 aaKnown RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 DGUOKQ16854 277 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TIGD6Q17RP2 521 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 MAJINQ3KP22 176 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF658BQ4V348 819 aaPredicted RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 C2orf27AQ580R0 203 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 DEPDC1Q5TB30 811 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PRSS48Q7RTY5 328 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 C6orf120Q7Z4R8 191 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 CAMKMTQ7Z624 323 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PDZD3Q86UT5 571 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PSMA8Q8TAA3 256 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SLC38A5Q8WUX1 472 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SMARCD2Q92925 531 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 UBE2E3Q969T4 207 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TM4SF18Q96CE8 201 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 COL21A1Q96P44 957 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 KXD1Q9BQD3 176 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 CHCHD6Q9BRQ6 235 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 MIR1-1HGQ9H1L0 117 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 DPEP2Q9H4A9 486 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 FAIMQ9NVQ4 179 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TRNAU1APQ9NX07 287 aaKnown RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 AHSPQ9NZD4 102 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SLC27A6Q9Y2P4 619 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 F5P12259 2224 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 NUMA1Q14980 2115 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TRBV4-1A0A0J9YWV2 114 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SLC31A1O15431 190 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 AIREO43918 545 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GABARAPO95166 117 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GADD45AP24522 165 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 EVI2BP34910 448 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GGT2P36268 569 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 MAPK9P45984 424 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 FCHO2Q0JRZ9 810 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 SYPL1Q16563 259 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GAB4Q2WGN9 574 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PTCHD4Q6ZW05 846 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF554Q86TJ5 538 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 FAM129CQ86XR2 697 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 DOK4Q8TEW6 326 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 FBLIM1Q8WUP2 373 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TRUB1Q8WWH5 349 aaKnown RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GEMIN6Q8WXD5 167 aaKnown RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF566Q969W8 418 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PIP5K1AQ99755 562 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 TRMT61BQ9BVS5 477 aaKnown RBP8.32□□□□□ -1.08
LINC00558-201ENST00000569422 PRR14Q9BWN1 585 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 KLHL31Q9H511 634 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 EPHX3Q9H6B9 360 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 EQTNQ9NQ60 294 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ACER3Q9NUN7 267 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 FBXW2Q9UKT8 454 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 GPR34Q9UPC5 381 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 NAALAD2Q9Y3Q0 740 aa8.32□□□□□ -1.08
LINC00558-201ENST00000569422 ANHXE9PGG2 379 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 VEGFDO43915 354 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 KAT7O95251 611 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 HOXB6P17509 224 aaKnown RBP8.31□□□□□ -1.08
LINC00558-201ENST00000569422 TNNI3P19429 210 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 PIK3CBP42338 1070 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 CCR8P51685 355 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 LIM2P55344 173 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 RAB8AP61006 207 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 LSM11P83369 360 aaKnown RBP eCLIP8.31□□□□□ -1.08
LINC00558-201ENST00000569422 PIN1Q13526 163 aaPredicted RBP8.31□□□□□ -1.08
LINC00558-201ENST00000569422 GNA13Q14344 377 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 PUM1Q14671 1186 aaKnown RBP eCLIP8.31□□□□□ -1.08
LINC00558-201ENST00000569422 HEPACAMQ14CZ8 416 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 CARTPTQ16568 116 aa8.31□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF630Q2M218 657 aaPredicted RBP8.31□□□□□ -1.08
LINC00558-201ENST00000569422 SYT6Q5T7P8 510 aaPredicted RBP8.31□□□□□ -1.08
LINC00558-201ENST00000569422 REEP3Q6NUK4 255 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms