RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 MARVELD3Q96A59 401 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 VPS33AQ96AX1 596 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 ZNF764Q96H86 408 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-208ENST00000553868 ITCHQ96J02 903 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 SLC41A2Q96JW4 573 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 TEFMQ96QE5 360 aaKnown RBP13.65□□□□□ -0.22
SHMT2-208ENST00000553868 HOPXQ9BPY8 73 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-208ENST00000553868 MACROD1Q9BQ69 325 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 NUDT22Q9BRQ3 303 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 SORBS1Q9BX66 1292 aaKnown RBP13.65□□□□□ -0.22
SHMT2-208ENST00000553868 KLHL31Q9H511 634 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 GPN2Q9H9Y4 310 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-208ENST00000553868 WDR41Q9HAD4 459 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 SLC52A3Q9NQ40 469 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 LHX9Q9NQ69 397 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 IRAK4Q9NWZ3 460 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 PHF11Q9UIL8 331 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 KCND3Q9UK17 655 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 CROTQ9UKG9 612 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 SPACA6W5XKT8 324 aa13.65□□□□□ -0.22
SHMT2-208ENST00000553868 C15orf38-AP3S2A0A0A6YYH1 394 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 GSC2O15499 205 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 P2RX6O15547 441 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TBX19O60806 448 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 IL3P08700 152 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 FURINP09958 794 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SMIM10L1P0DMW3 83 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 NQO1P15559 274 aaKnown RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 NELFEP18615 380 aaKnown RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 ITGAXP20702 1163 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 DDCP20711 480 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 CPOXP36551 454 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 PGM1P36871 562 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 DGKQP52824 942 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SLC25A3Q00325 362 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SLAMF1Q13291 335 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 PDE7AQ13946 482 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 GRM7Q14831 915 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TLR1Q15399 786 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 UGT8Q16880 541 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 PRTGQ2VWP7 1150 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 DEFB110Q30KQ9 67 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TRMT5Q32P41 509 aaKnown RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SNAP47Q5SQN1 464 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TCTN3Q6NUS6 607 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 BNC2Q6ZN30 1099 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 ARPINQ7Z6K5 226 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 DEFB107AQ8IZN7 70 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 D2HGDHQ8N465 521 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 KIF2BQ8N4N8 673 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TTC29Q8NA56 475 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 OR8K5Q8NH50 307 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 ZCCHC10Q8TBK6 192 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 GFM2Q969S9 779 aaKnown RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TM4SF18Q96CE8 201 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 COQ8BQ96D53 544 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SMIM10Q96HG1 83 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 ZNF285Q96NJ3 590 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 TAAR9Q96RI9 348 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 DUSP26Q9BV47 211 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 B3GNT4Q9C0J1 378 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 BHLHE41Q9C0J9 482 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-208ENST00000553868 AICDAQ9GZX7 198 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SYNPO2LQ9H987 977 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 ANKHQ9HCJ1 492 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 MS4A12Q9NXJ0 267 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 EHD3Q9NZN3 535 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 SH3BP4Q9P0V3 963 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 PDP2Q9P2J9 529 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 MAP4K5Q9Y4K4 846 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 KCNMB2Q9Y691 235 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 CCDC168Q8NDH2 2452 aa13.64□□□□□ -0.23
SHMT2-208ENST00000553868 HEATR5BQ9P2D3 2071 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 SVILO95425 2214 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 A0A0G2JN53 185 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 GABRR3A8MPY1 467 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 TMPRSS11DO60235 418 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 ERN1O75460 977 aaKnown RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 KCNH1O95259 989 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 CD1EP15812 388 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 TLX1P31314 330 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 BUD31P41223 144 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 GABRA4P48169 554 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 SEPHS1P49903 392 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 HNRNPFP52597 415 aaKnown RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 CORO7P57737 925 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 ACY1Q03154 408 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 TRA2AQ13595 282 aaKnown RBP eCLIP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 FAM214AQ32MH5 1076 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 MRM1Q6IN84 353 aaKnown RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 CYB5D1Q6P9G0 228 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 ZNF793Q6ZN11 406 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 RETREG3Q86VR2 466 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 GPR135Q8IZ08 494 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 OR7A2PQ8NGA2 310 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 NPLQ9BXD5 320 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 CLK4Q9HAZ1 481 aaKnown RBP13.63□□□□□ -0.23
SHMT2-208ENST00000553868 LYRM4Q9HD34 91 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 PRDM9Q9NQV7 894 aa13.63□□□□□ -0.23
SHMT2-208ENST00000553868 ENAMQ9NRM1 1142 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms