RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 GPR78Q96P69 363 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 SMC6Q96SB8 1091 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 CENPKQ9BS16 269 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 ACTR8Q9H981 624 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 SH2D2AQ9NP31 389 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 PNPLA3Q9NST1 481 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 TUBA8Q9NY65 449 aaPredicted RBP16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 ANGPTL3Q9Y5C1 460 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 A0A096LPK6 155 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 OR14I1A6ND48 311 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 FAM90A27PA6NNH2 459 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 NPIPA2E9PIF3 369 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 NPIPA3F8WFD2 350 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 TMPRSS11DO60235 418 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 UGDHO60701 494 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 EEDO75530 441 aaKnown RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ALDOAP04075 364 aaKnown RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 CELA3AP09093 270 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ALOX15P16050 662 aaPredicted RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 BSGP35613 385 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 SERPINB8P50452 374 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 NUP107P57740 925 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ACAP2Q15057 778 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 PCBP2Q15366 365 aaKnown RBP eCLIP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 SPRED3Q2MJR0 410 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ZNF791Q3KP31 576 aaPredicted RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 TRILQ7L0X0 811 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 GOLGA7Q7Z5G4 137 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ST13P4Q8IZP2 240 aaPredicted RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 LILRB4Q8NHJ6 448 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 SLC22A8Q8TCC7 542 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 CHTF18Q8WVB6 975 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 RND1Q92730 232 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 TANKQ92844 425 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 PPWD1Q96BP3 646 aaKnown RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 MRRFQ96E11 262 aaKnown RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 SPACA9Q96E40 222 aaPredicted RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ART5Q96L15 291 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 SEMA4BQ9NPR2 832 aaPredicted RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 LYARQ9NX58 379 aaKnown RBP16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ASB4Q9Y574 426 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 PCDHGA11Q9Y5H2 935 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 ARHGAP21Q5T5U3 1957 aa16.06■□□□□ 0.16
CHMP1A-205ENST00000548650 A0A1B0GVC2 190 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 NKX2-6A6NCS4 301 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 BCKDKO14874 412 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 PROM1O43490 865 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 KLHL2O95198 593 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 SIX3O95343 332 aaPredicted RBP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 P04436 131 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 NR2F6P10588 404 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 BUD31P41223 144 aaPredicted RBP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 HERVK_113P63132 956 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 ERVK-8P63133 956 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 SLC7A5Q01650 507 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 TLE4Q04727 773 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 CUL3Q13618 768 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 GTF2H2Q13888 395 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 CPSF6Q16630 551 aaKnown RBP eCLIP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 GXYLT1Q4G148 440 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 TECRLQ5HYJ1 363 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 C8orf74Q6P047 294 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 GTF2H2CQ6P1K8 395 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 CCDC71Q8IV32 467 aaPredicted RBP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 L3MBTL4Q8NA19 623 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 OR5M3Q8NGP4 307 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 WDR20Q8TBZ3 569 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 REPS1Q96D71 796 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 RBM18Q96H35 190 aaKnown RBP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 CNPPD1Q9BV87 410 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 ERVK-6Q9BXR3 956 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 ACSS3Q9H6R3 686 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 ZNF703Q9H7S9 590 aaPredicted RBP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 NINJ2Q9NZG7 142 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 CPSF2Q9P2I0 782 aaKnown RBP16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 ERVK-19Q9WJR5 959 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 FAM215AQ9Y5M1 114 aa16.05■□□□□ 0.16
CHMP1A-205ENST00000548650 A0A1W2PR48 441 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 LRRC3CA6NJW4 275 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 FIGNL2A6NMB9 653 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 AQP7O14520 342 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 DYRK3O43781 588 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 TOXO94900 526 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 AIFM1O95831 613 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 CLPSP04118 112 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 ENDOUP21128 410 aaKnown RBP16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 PTX3P26022 381 aaPredicted RBP16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 ACVR2AP27037 513 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 MSX1P28360 303 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 TLX1P31314 330 aaPredicted RBP16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 PIGAP37287 484 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 PIK3CGP48736 1102 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 PHEXP78562 749 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 BIKQ13323 160 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 EBPQ15125 230 aaKnown RBP16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 UAP1Q16222 522 aaPredicted RBP16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 ACAD11Q709F0 780 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 NUDT13Q86X67 352 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 OR5M9Q8NGP3 310 aa16.04■□□□□ 0.16
CHMP1A-205ENST00000548650 DOK4Q8TEW6 326 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms