RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 POLR2CP19387 275 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 MAPKAPK2P49137 400 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 DGKGP49619 791 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 CHRNEQ04844 493 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 GRIN2CQ14957 1233 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 MICAQ29983 383 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 PLPP4Q5VZY2 271 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 KDM4DQ6B0I6 523 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 MED27Q6P2C8 311 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 KLBQ86Z14 1044 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 GLTPD2A6NH11 291 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 ALDOBP05062 364 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 KLK1P06870 262 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SAGP10523 405 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 OMPP47874 163 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 PTPRRQ15256 657 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 ELP2Q6IA86 826 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 OR8K5Q8NH50 307 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 ZFAND1Q8TCF1 268 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 OR8D1Q8WZ84 308 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SLC39A13Q96H72 371 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 OR6C2Q9NZP2 312 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 AKAP7Q9P0M2 348 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 ASB1Q9Y576 335 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 PCDHGA6Q9Y5G7 932 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 CIB4A0PJX0 185 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 B4DXG7 233 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 ACSL4O60488 711 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 PAHP00439 452 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 GKP32189 559 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SSR2P43308 183 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SLC35F1Q5T1Q4 408 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 IL20RBQ6UXL0 311 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 TAF8Q7Z7C8 310 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 CFAP206Q8IYR0 622 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SPAG16Q8N0X2 631 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 OXR1Q8N573 874 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.61□□□□□ -0.233e-13■■□□□ 11.5
LIMS1-215ENST00000544547 HRASLS5Q96KN8 279 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SECISBP2Q96T21 854 aaKnown RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 OR51J1Q9H342 316 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 RBFOX1Q9NWB1 397 aaKnown RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 IL20RAQ9UHF4 553 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 IRAK3Q9Y616 596 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 TEX51A0A1B0GUA7 166 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 H3BSH0 61 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 HLA-DQA2P01906 255 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 ACPPP15309 386 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SDC1P18827 310 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 NSG1P42857 185 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 GZMKP49863 264 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 RGS8P57771 180 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 UBXN11Q5T124 520 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 HSDL2Q6YN16 418 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 OR4K3Q96R72 315 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 NIPSNAP1Q9BPW8 284 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SAP130Q9H0E3 1048 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 OR10A4Q9H209 315 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 CDCP1Q9H5V8 836 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 RC3H2Q9HBD1 1191 aaKnown RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 HPF1Q9NWY4 346 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 OR14I1A6ND48 311 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 FAM227AF5H4B4 570 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 GPX5O75715 221 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 EPOP01588 193 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 CD3GP09693 182 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SELPP16109 830 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 ADRA1AP35348 466 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 CTBP2P56545 445 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 HOXC5Q00444 222 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 C4orf46Q504U0 113 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 FRMPD2BQ6IN97 320 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 GDF6Q6KF10 455 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 CAPN13Q6MZZ7 669 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 FUT10Q6P4F1 479 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 C17orf64Q86WR6 236 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SYNPOQ8N3V7 929 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 OR10G6Q8NH81 332 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 TRIM43Q96BQ3 446 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 TIFAQ96CG3 184 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 SLC27A6Q9Y2P4 619 aa13.61□□□□□ -0.23
LIMS1-215ENST00000544547 ZFC3H1O60293 1989 aaKnown RBP13.61□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3DA0A087WVF3 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3IA0A087WXS9 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3EA0A087X179 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3KA0A087X1G2 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3FA6NER0 549 aaPredicted RBP13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3LB9A6J9 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 J3QLW9 94 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 GATBO75879 557 aaKnown RBP13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3HP0C7X1 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 ZNF19P17023 458 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 MLLT3P42568 568 aaPredicted RBP13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TAS2R50P59544 299 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3GQ6DHY5 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3CQ6IPX1 549 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 TBC1D3Q8IZP1 549 aaPredicted RBP13.6□□□□□ -0.23
LIMS1-215ENST00000544547 OR52P1PQ8NH57 321 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 SH3RF2Q8TEC5 729 aa13.6□□□□□ -0.23
LIMS1-215ENST00000544547 PTPN18Q99952 460 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms