RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 GGT2P36268 569 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CCT3P49368 545 aaKnown RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 CDH12P55289 794 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 IL1RL1Q01638 556 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 EMX1Q04741 257 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 LRRC32Q14392 662 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 SLC9A5Q14940 896 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CEBPEQ15744 281 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CCDC92Q53HC0 331 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 MLIPQ5VWP3 458 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TNFAIP8L2Q6P589 184 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 SMRP1Q8NCR6 262 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 RAB2BQ8WUD1 216 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 NECTIN4Q96NY8 510 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 ZNF624Q9P2J8 865 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 SNX7Q9UNH6 387 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 SNX5Q9Y5X3 404 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 PIAS3Q9Y6X2 628 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 A0A0G2JN53 185 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 PRAMEF27A3QJZ7 478 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TMX2-CTNND1H3BSU7 103 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TNFRSF10CO14798 259 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 PCDHGA12O60330 932 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 BCHEP06276 602 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TEKQ02763 1124 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 RPS26P11Q5JNZ5 115 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 AMIGO1Q86WK6 493 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 LGI4Q8N135 537 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 ACOT4Q8N9L9 421 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TMEM145Q8NBT3 493 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 C8orf33Q9H7E9 229 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 ERVK-18Q9QC07 812 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 APOBEC3BQ9UH17 382 aaKnown RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 FANCMQ8IYD8 2048 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 A0A1W2PR48 441 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 NDUFV2P19404 249 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CBLP22681 906 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 KRT20P35900 424 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 SLAMF1Q13291 335 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CYP27C1Q4G0S4 372 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TOR1AIP1Q5JTV8 583 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 ZNF770Q6IQ21 691 aaPredicted RBP13.04□□□□□ -0.32
RTN3-210ENST00000540798 ENPP7Q6UWV6 458 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TMEM92Q6UXU6 159 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 SLC16A12Q6ZSM3 486 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 PARP8Q8N3A8 854 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 TBC1D19Q8N5T2 526 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 SUN3Q8TAQ9 357 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 SFXN5Q8TD22 340 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CSF3RQ99062 836 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 CLDND1Q9NY35 253 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 AASSQ9UDR5 926 aa13.04□□□□□ -0.32
RTN3-210ENST00000540798 PTGES3LE9PB15 166 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 H0Y8X5 98 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 FFAR1O14842 300 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 ERI3O43414 337 aaKnown RBP13.03□□□□□ -0.32
RTN3-210ENST00000540798 PDE9AO76083 593 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 IFNW1P05000 195 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 SERPIND1P05546 499 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 HNRNPA2B1P22626 353 aaKnown RBP13.03□□□□□ -0.32
RTN3-210ENST00000540798 ACSL1P33121 698 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 CSNK2BP67870 215 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 NPTX1Q15818 432 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 FGD3Q5JSP0 725 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 TMEM53Q6P2H8 277 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 OR8K5Q8NH50 307 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 NIPSNAP1Q9BPW8 284 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 PLCXD1Q9NUJ7 323 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 RNF6Q9Y252 685 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 CA5BQ9Y2D0 317 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 ATG4BQ9Y4P1 393 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 A0A1W2PPW3 197 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 SHISA7A6NL88 538 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 ZNF99A8MXY4 864 aaPredicted RBP13.03□□□□□ -0.32
RTN3-210ENST00000540798 SCAMP1O15126 338 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 KCNJ5P48544 419 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 LIM2P55344 173 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 NFATC3Q12968 1075 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 SPDYE7PQ495Y7 208 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 NT5CQ8TCD5 201 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 IPCEF1Q8WWN9 437 aaPredicted RBP13.03□□□□□ -0.32
RTN3-210ENST00000540798 MACROD1Q9BQ69 325 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 CCNB1IP1Q9NPC3 277 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 SCN3BQ9NY72 215 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 SH3GLB1Q9Y371 365 aa13.03□□□□□ -0.32
RTN3-210ENST00000540798 GPC6Q9Y625 555 aaPredicted RBP13.03□□□□□ -0.32
RTN3-210ENST00000540798 C5orf58C9J3I9 102 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 PCDH17O14917 1159 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 GUCY1B2O75343 617 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 INMTO95050 263 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 GABRB1P18505 474 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 AK4P27144 223 aaPredicted RBP13.02□□□□□ -0.32
RTN3-210ENST00000540798 HTR1BP28222 390 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 TPMTP51580 245 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 SMN1Q16637 294 aaKnown RBP13.02□□□□□ -0.32
RTN3-210ENST00000540798 NRROSQ86YC3 692 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 ANKRD13BQ86YJ7 626 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 SRFBP1Q8NEF9 429 aaKnown RBP13.02□□□□□ -0.32
RTN3-210ENST00000540798 LCN9Q8WX39 176 aa13.02□□□□□ -0.32
RTN3-210ENST00000540798 RAB8BQ92930 207 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms