RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 VANGL1Q8TAA9 524 aaPredicted RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 KLHL6Q8WZ60 621 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 OR5P2Q8WZ92 322 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 TM4SF18Q96CE8 201 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 NUS1Q96E22 293 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 LINC00615Q96LM1 132 aaPredicted RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 CCDC32Q9BV29 185 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 DPEP2Q9H4A9 486 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 SMURF1Q9HCE7 757 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 EXOSC4Q9NPD3 245 aaKnown RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 C5AR2Q9P296 337 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 MGAT4BQ9UQ53 548 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 C17orf113A0A1B0GUU1 675 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 H3BQ06 376 aaPredicted RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 MAPK12P53778 367 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 HSPB3Q12988 150 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 DCST1Q5T197 706 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 KHDRBS2Q5VWX1 349 aaKnown RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 SLC34A3Q8N130 599 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 KRT78Q8N1N4 520 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 TRMT61AQ96FX7 289 aaKnown RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 CEP19Q96LK0 163 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 C3orf14Q9HBI5 128 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 CRNNQ9UBG3 495 aaPredicted RBP18.28■□□□□ 0.52
VPS28-213ENST00000530983 TBC1D24Q9ULP9 559 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 ASF1AQ9Y294 204 aa18.28■□□□□ 0.52
VPS28-213ENST00000530983 PDZK1P1A8MUH7 402 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 H3BN98 237 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 HMGN4O00479 90 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 GUCY1B2O75343 617 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 CD72P21854 359 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.27■□□□□ 0.52
VPS28-213ENST00000530983 SPHARQ15513 63 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 RSBN1Q5VWQ0 802 aaPredicted RBP18.27■□□□□ 0.52
VPS28-213ENST00000530983 MEDAGQ5VYS4 303 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 DEF8Q6ZN54 512 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 FAM92BQ6ZTR7 304 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 BCDIN3DQ7Z5W3 292 aaKnown RBP18.27■□□□□ 0.52
VPS28-213ENST00000530983 C11orf96Q7Z7L8 435 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 ANKRD53Q8N9V6 530 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 OR2L2Q8NH16 312 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 TMEM80Q96HE8 168 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 ZSWIM3Q96MP5 696 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 F2RL3Q96RI0 385 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 OR52A5Q9H2C5 316 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 SIRT3Q9NTG7 399 aaPredicted RBP18.27■□□□□ 0.52
VPS28-213ENST00000530983 TRAPPC4Q9Y296 219 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 SNX11Q9Y5W9 270 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 PTPRSQ13332 1948 aa18.27■□□□□ 0.52
VPS28-213ENST00000530983 FAAHO00519 579 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 PDPK1O15530 556 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 CCNKO75909 580 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 H1F0P07305 194 aaKnown RBP18.27■□□□□ 0.51
VPS28-213ENST00000530983 RHOP08100 348 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 HBQ1P09105 142 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 BSGP35613 385 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 CRYBB2P43320 205 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 XKP51811 444 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 ZNF91Q05481 1191 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 PGBD2Q6P3X8 592 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 C6orf120Q7Z4R8 191 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 FLCNQ8NFG4 579 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 PPP1R16AQ96I34 528 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 ZNF354BQ96LW1 612 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 DYRK4Q9NR20 520 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 AHSPQ9NZD4 102 aa18.27■□□□□ 0.51
VPS28-213ENST00000530983 MMP20O60882 483 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 APOA1P02647 267 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 RB1P06400 928 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 CISD3P0C7P0 127 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 LINC00271P0C7V0 271 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 C6P13671 934 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 TIE1P35590 1138 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 KCNJ5P48544 419 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 PCBP4P57723 403 aaKnown RBP18.26■□□□□ 0.51
VPS28-213ENST00000530983 NCF4Q15080 339 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 LRRC26Q2I0M4 334 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 ARHGAP15Q53QZ3 475 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 CELF5Q8N6W0 485 aaKnown RBP18.26■□□□□ 0.51
VPS28-213ENST00000530983 SLC7A13Q8TCU3 470 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 OR2A14Q96R47 310 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 FUZQ9BT04 418 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 POLR2J3Q9H1A7 115 aaKnown RBP18.26■□□□□ 0.51
VPS28-213ENST00000530983 RHBGQ9H310 441 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 NEUROD4Q9HD90 331 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 ACAD8Q9UKU7 415 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 PRKAB1Q9Y478 270 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 HIDE1A8MVS5 230 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 ANHXE9PGG2 379 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 TBX19O60806 448 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 SLITRK5O94991 958 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 SEMA3DO95025 777 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 TP53P04637 393 aaPredicted RBP18.26■□□□□ 0.51
VPS28-213ENST00000530983 VASPP50552 380 aaPredicted RBP18.26■□□□□ 0.51
VPS28-213ENST00000530983 CASP12Q6UXS9 341 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 TMC5Q6UXY8 1006 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 RAD51AP1Q96B01 352 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 ARRDC3Q96B67 414 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 ZNF514Q96K75 400 aaPredicted RBP18.26■□□□□ 0.51
VPS28-213ENST00000530983 MND1Q9BWT6 205 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms