RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 LYRM4Q9HD34 91 aa10□□□□□ -0.81
DDX41-216ENST00000513562 C15orf41Q9Y2V0 281 aa10□□□□□ -0.81
DDX41-216ENST00000513562 CAPN6Q9Y6Q1 641 aa10□□□□□ -0.81
DDX41-216ENST00000513562 RTTNQ86VV8 2226 aa10□□□□□ -0.81
DDX41-216ENST00000513562 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 A8MXE2 369 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 RCBTB2O95199 551 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 ACSL3O95573 720 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 IFNA2P01563 188 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 C1GALT1C1LP0DN25 315 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 COX7A2P14406 83 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 GABRB3P28472 473 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 HPDP32754 393 aaPredicted RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 SOX18P35713 384 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 MC3RP41968 323 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 MSH2P43246 934 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 SLCO1A2P46721 670 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 PCYT1AP49585 367 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 TERF1P54274 439 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 IGLV3-21P80748 117 aaPredicted RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 ID2Q02363 134 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 SLBPQ14493 270 aaKnown RBP eCLIP9.99□□□□□ -0.81
DDX41-216ENST00000513562 FNDC7Q5VTL7 733 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 SLCO4C1Q6ZQN7 724 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 VN1R5Q7Z5H4 357 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 C7orf57Q8NEG2 295 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 SLC44A1Q8WWI5 657 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 ABTB1Q969K4 478 aaPredicted RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 ANKRD9Q96BM1 317 aaPredicted RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 FBXL20Q96IG2 436 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 SERPINB12Q96P63 405 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 TM9SF2Q99805 663 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 COPS7BQ9H9Q2 264 aaPredicted RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 IARS2Q9NSE4 1012 aaKnown RBP9.99□□□□□ -0.81
DDX41-216ENST00000513562 IKZF3Q9UKT9 509 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 ZKSCAN5Q9Y2L8 839 aa9.99□□□□□ -0.81
DDX41-216ENST00000513562 HRKO00198 91 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 SOX30O94993 753 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 SNX4O95219 450 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 CYP4B1P13584 511 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 NID1P14543 1247 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 GNAZP19086 355 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 CRYGSP22914 178 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 CPOXP36551 454 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ANP32AP39687 249 aaKnown RBP9.98□□□□□ -0.81
DDX41-216ENST00000513562 RPL21P46778 160 aaKnown RBP9.98□□□□□ -0.81
DDX41-216ENST00000513562 STT3AP46977 705 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 KCNJ1P48048 391 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 KIF5AQ12840 1032 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 PDAP1Q13442 181 aaKnown RBP9.98□□□□□ -0.81
DDX41-216ENST00000513562 RPS6KA2Q15349 733 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 EIPR1Q53HC9 387 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 BICRALQ6AI39 1079 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 DGAT2L6Q6ZPD8 337 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ADGRE4PQ86SQ3 457 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 AGGF1Q8N302 714 aaeCLIP9.98□□□□□ -0.81
DDX41-216ENST00000513562 MEIOBQ8N635 442 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ZNF441Q8N8Z8 693 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 DIO2Q92813 273 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 PIK3IP1Q96FE7 263 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ART5Q96L15 291 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 MARK4Q96L34 752 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 RILPQ96NA2 401 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 WFIKKN1Q96NZ8 548 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 GNRHR2Q96P88 292 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 HS3ST6Q96QI5 342 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 UCN2Q96RP3 112 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 TUBA1CQ9BQE3 449 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 PITHD1Q9GZP4 211 aaPredicted RBP9.98□□□□□ -0.81
DDX41-216ENST00000513562 WWTR1Q9GZV5 400 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 NT5DC2Q9H857 520 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 XAB2Q9HCS7 855 aaKnown RBP9.98□□□□□ -0.81
DDX41-216ENST00000513562 PRDM7Q9NQW5 492 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ZNF701Q9NV72 531 aaPredicted RBP9.98□□□□□ -0.81
DDX41-216ENST00000513562 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.98□□□□□ -0.81
DDX41-216ENST00000513562 KLHL28Q9NXS3 571 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ZNF226Q9NYT6 803 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ADGRE2Q9UHX3 823 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 PACSIN3Q9UKS6 424 aa9.98□□□□□ -0.81
DDX41-216ENST00000513562 ARHGAP21Q5T5U3 1957 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 DYRK3O43781 588 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 FGF17O60258 216 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 H2AFYO75367 372 aaKnown RBP9.97□□□□□ -0.81
DDX41-216ENST00000513562 TNFSF13O75888 250 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 ACTL6AO96019 429 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 CCDC175P0C221 793 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 CPN1P15169 458 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 LOXP28300 417 aaPredicted RBP9.97□□□□□ -0.81
DDX41-216ENST00000513562 MAGEA3P43357 314 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 KCNC1P48547 511 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 MASP1P48740 699 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 VPS41P49754 854 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 PGGT1BP53609 377 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 NAGLUP54802 743 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 DIO3P55073 304 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 EEF1A1P68104 462 aaKnown RBP9.97□□□□□ -0.81
DDX41-216ENST00000513562 TGM3Q08188 693 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 FAM27E3Q08E93 113 aa9.97□□□□□ -0.81
DDX41-216ENST00000513562 TNK1Q13470 666 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms