RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PELOQ9BRX2 385 aaKnown RBP11.57□□□□□ -0.56
SKA3-206ENST00000475251 EFCAB11Q9BUY7 163 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 PRDM14Q9GZV8 571 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 PRM3Q9NNZ6 103 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 LZTFL1Q9NQ48 299 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 PRDM7Q9NQW5 492 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 MS4A12Q9NXJ0 267 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CTNNAL1Q9UBT7 734 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 IKZF3Q9UKT9 509 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 CHCHD2Q9Y6H1 151 aaPredicted RBP11.57□□□□□ -0.56
SKA3-206ENST00000475251 IKBKGQ9Y6K9 419 aa11.57□□□□□ -0.56
SKA3-206ENST00000475251 IQANK1A0A1B0GTG1 560 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 MYOCOSA0A1B0GUC4 107 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 MBD3L4A6NDZ8 208 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 MBD3L3A6NE82 208 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 MBD3L5A6NJ08 208 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 TP53I11O14683 189 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 CASKO14936 926 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 ERN1O75460 977 aaKnown RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 TRAPPC6AO75865 159 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 SNX4O95219 450 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 HRGP04196 525 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 IGKV3-11P04433 115 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 GCKP35557 465 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 GDF5P43026 501 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 IGLV3-21P80748 117 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 RCAN2Q14206 197 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 CYP1B1Q16678 543 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 AP5B1Q2VPB7 878 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 TMEM35AQ53FP2 167 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 RNASEH2BQ5TBB1 312 aaKnown RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 POMZP3Q6PJE2 187 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 LYPD8Q6UX82 237 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 ZNF662Q6ZS27 426 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 SYDE1Q6ZW31 735 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 KRTAP1-3Q8IUG1 177 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 LRRN4CLQ8ND94 238 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 SIMC1Q8NDZ2 872 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 OR10G3Q8NGC4 313 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 SPATA3Q8NHX4 192 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 MBD3L2Q8NHZ7 208 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 PIGTQ969N2 578 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 NTNG2Q96CW9 530 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 VPS39Q96JC1 886 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 GAL3ST4Q96RP7 486 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 KRT12Q99456 494 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 PIP5K1AQ99755 562 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 MAPKAP1Q9BPZ7 522 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 BDH2Q9BUT1 245 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 CALHM2Q9HA72 323 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 DNAJC11Q9NVH1 559 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 CAMK2AQ9UQM7 478 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 EIF3LQ9Y262 564 aaKnown RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 VPS13CQ709C8 3753 aa11.56□□□□□ -0.56
SKA3-206ENST00000475251 HRNRQ86YZ3 2850 aaPredicted RBP11.56□□□□□ -0.56
SKA3-206ENST00000475251 OR6C76A6NM76 312 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 TBX6O95947 436 aaPredicted RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 HPNP05981 417 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 HIST1H1TP22492 207 aaPredicted RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 ATP5A1P25705 553 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 SERPINB1P30740 379 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 TLX1P31314 330 aaPredicted RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 CPA2P48052 419 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 MASP1P48740 699 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 TMED10P49755 219 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 PGGT1BP53609 377 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 RPP38P78345 283 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 PPP2R2BQ00005 443 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 ID2Q02363 134 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 ILF2Q12905 390 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 PPP1R7Q15435 360 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 NTRK2Q16620 822 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 NHSL2Q5HYW2 709 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 Q5PR19 223 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 SCIMPQ6UWF3 145 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 RNF111Q6ZNA4 994 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 CAPN12Q6ZSI9 719 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 VN1R5Q7Z5H4 357 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 PACS2Q86VP3 889 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 ACOT4Q8N9L9 421 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 BBOF1Q8ND07 529 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 DIO2Q92813 273 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 TANKQ92844 425 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 UBE2E3Q969T4 207 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 ANKRD9Q96BM1 317 aaPredicted RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 WDR34Q96EX3 536 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 COX4I2Q96KJ9 171 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 ZFP3Q96NJ6 502 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 F2RL3Q96RI0 385 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 TRIB1Q96RU8 372 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 REPIN1Q9BWE0 567 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 RBM24Q9BX46 236 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 PHACTR1Q9C0D0 580 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 EPB41L4BQ9H329 900 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 ACBD3Q9H3P7 528 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 PROK2Q9HC23 129 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 TRMT1Q9NXH9 659 aaKnown RBP11.55□□□□□ -0.56
SKA3-206ENST00000475251 WWOXQ9NZC7 414 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 JKAMPQ9P055 326 aa11.55□□□□□ -0.56
SKA3-206ENST00000475251 NDRG3Q9UGV2 375 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms