RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SH2D2AQ9NP31 389 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 GLOD5A6NK44 160 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 E9PLN8 166 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 POC1B-GALNT4F8VUJ3 575 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 G3V3Y1 287 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 C19orf84I3L1E1 186 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 GPR75O95800 540 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 GBAP04062 536 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 RPS17P08708 135 aaKnown RBP17.17■□□□□ 0.34
COL7A1-209ENST00000474432 CTAGE8P0CG41 777 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 ALOX15P16050 662 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-209ENST00000474432 PTGS2P35354 604 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 FOXO1Q12778 655 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF791Q3KP31 576 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-209ENST00000474432 EMC4Q5J8M3 183 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 RTL4Q6ZR62 310 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 CTAGE4Q8IX94 777 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 ST13P4Q8IZP2 240 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-209ENST00000474432 MARVELD2Q8N4S9 558 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 OR5L2Q8NGL0 311 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 NUBPLQ8TB37 319 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 FAM57AQ8TBR7 257 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 MTFMTQ96DP5 389 aaKnown RBP17.17■□□□□ 0.34
COL7A1-209ENST00000474432 FBXL20Q96IG2 436 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 VKORC1Q9BQB6 163 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 DEFB127Q9H1M4 99 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 ZDHHC11Q9H8X9 412 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 LYARQ9NX58 379 aaKnown RBP17.17■□□□□ 0.34
COL7A1-209ENST00000474432 NCKAP5O14513 1909 aa17.17■□□□□ 0.34
COL7A1-209ENST00000474432 PDZD2O15018 2839 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 PGRMC2O15173 223 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 PDE9AO76083 593 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 SEMA3DO95025 777 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 AIFM1O95831 613 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 CCL3P10147 92 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 CNR1P21554 472 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 ASPHQ12797 758 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 BIKQ13323 160 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 SPRED3Q2MJR0 410 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 TSNAXIP1Q2TAA8 658 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 FRG2Q64ET8 278 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 GOLM1Q8NBJ4 401 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 C7orf57Q8NEG2 295 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 MNS1Q8NEH6 495 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 RBM18Q96H35 190 aaKnown RBP17.16■□□□□ 0.34
COL7A1-209ENST00000474432 FRG2BQ96QU4 278 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 CENPKQ9BS16 269 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 C1QTNF3Q9BXJ4 246 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 TTTY12Q9BZ98 90 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 PRM3Q9NNZ6 103 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 SEMA4BQ9NPR2 832 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-209ENST00000474432 TEX10Q9NXF1 929 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF225Q9UK10 706 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 TMCO1Q9UM00 188 aa17.16■□□□□ 0.34
COL7A1-209ENST00000474432 DCHS2Q6V1P9 2916 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 FAM166BA8MTA8 275 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 PRRG2O14669 202 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 CDC40O60508 579 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 KRT38O76015 456 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 NR2F6P10588 404 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 COX7A2P14406 83 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 CNTFP26441 200 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 TLX1P31314 330 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 BUD31P41223 144 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 KIR3DL1P43629 444 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 CCNG1P51959 295 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 SMSP52788 366 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 SLC37A1P57057 533 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 PPIAP62937 165 aaKnown RBP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 HERVK_113P63132 956 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 ERVK-8P63133 956 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 PHEXP78562 749 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 PLIN5Q00G26 463 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 GGTA1PQ4G0N0 100 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 OPN5Q6U736 354 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 NUDT13Q86X67 352 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 MCEMP1Q8IX19 187 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 OR4F6Q8NGB9 312 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF483Q8TF39 744 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 SGCZQ96LD1 299 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 SERPINI1Q99574 410 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 MRPL57Q9BQC6 102 aaKnown RBP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 ERVK-6Q9BXR3 956 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 PROK2Q9HC23 129 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 FARSBQ9NSD9 589 aaKnown RBP17.15■□□□□ 0.34
COL7A1-209ENST00000474432 COPS7AQ9UBW8 275 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 NFU1Q9UMS0 254 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 ERVK-19Q9WJR5 959 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 LIPGQ9Y5X9 500 aa17.15■□□□□ 0.34
COL7A1-209ENST00000474432 PHF3Q92576 2039 aaKnown RBP17.14■□□□□ 0.34
COL7A1-209ENST00000474432 A0A087WUV0 522 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-209ENST00000474432 A8MT66 165 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 CLDN14O95500 239 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 TPOP07202 933 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 GALNSP34059 522 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 DNASE1L1P49184 302 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 CDH13P55290 713 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 ZNF267Q14586 743 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-209ENST00000474432 HYAL4Q2M3T9 481 aa17.14■□□□□ 0.33
COL7A1-209ENST00000474432 LETMD1Q6P1Q0 360 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms