RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 IMP3Q9NV31 184 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 KRBA1A5PL33 1030 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SGCEO43556 437 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SNCGO76070 127 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 NFATC1O95644 943 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 BPNT1O95861 308 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OLFM2O95897 454 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 FHP07954 510 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 UNGP13051 313 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 FOXN2P32314 431 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 MARCKSL1P49006 195 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PRKAG1P54619 331 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ZNF266Q14584 549 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 DECR1Q16698 335 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ATAD3CQ5T2N8 411 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GTPBP3Q969Y2 492 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 COL26A1Q96A83 441 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CNN2Q99439 309 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 TVP23BQ9NYZ1 205 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 H3BMQ9 156 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PCDH17O14917 1159 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TAS2R39P59534 338 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TAS2R19P59542 299 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TUSC3Q13454 348 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GPR50Q13585 617 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PPP2R2DQ66LE6 453 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 IRF2BP1Q8IU81 584 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SUMF2Q8NBJ7 301 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CHTF18Q8WVB6 975 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 MUL1Q969V5 352 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ARMC5Q96C12 935 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 COG8Q96MW5 612 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 LYSMD1Q96S90 227 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CMSS1Q9BQ75 279 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 PLEKHM1Q9Y4G2 1056 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 A8MT66 165 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 POU3F3P20264 500 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 THBS2P35442 1172 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 RRAS2P62070 204 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 HNRNPA0Q13151 305 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 ESX1Q8N693 406 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 BBS1Q8NFJ9 593 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ASB17Q8WXJ9 295 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TFAP2CQ92754 450 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CELF6Q96J87 481 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 PKP2Q99959 881 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 TMEM248Q9NWD8 314 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PIH1D1Q9NWS0 290 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 GNG8Q9UK08 70 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ARVCFO00192 962 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 POLR2CP19387 275 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 CD34P28906 385 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CRADDP78560 199 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 MRPL10Q7Z7H8 261 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 LDB1Q86U70 411 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 SLC51AQ86UW1 340 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OR4K1Q8NGD4 311 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 RLIMQ9NVW2 624 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 NPFFR2Q9Y5X5 522 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 KIAA0513O60268 411 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ADAM23O75077 832 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 UBL3O95164 117 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ALPPL2P10696 532 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 IRF5Q13568 498 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 C9orf57Q5W0N0 161 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PLAG1Q6DJT9 500 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 AMZ2Q86W34 360 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TRAM1L1Q8N609 369 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OR4K2Q8NGD2 314 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 C17orf62Q9BQA9 187 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SLC5A7Q9GZV3 580 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 DMAC2Q9NW81 257 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PRR36Q9H6K5 1346 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GJE1A6NN92 205 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 AKAIN1P0CW23 69 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 UGT2B7P16662 529 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 AMD1P17707 334 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ZNF155Q12901 538 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 MLLT11Q13015 90 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 NAE1Q13564 534 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TEX26Q8N6G2 289 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 DNAAF1Q8NEP3 725 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SCPEP1Q9HB40 452 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SNNO75324 88 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 FUT4P22083 530 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 DDOSTP39656 456 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 C3orf38Q5JPI3 329 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CD276Q5ZPR3 534 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 RFWD3Q6PCD5 774 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SERPINA12Q8IW75 414 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SGPP2Q8IWX5 399 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GALNT11Q8NCW6 608 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TSSK2Q96PF2 358 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ZCCHC3Q9NUD5 404 aaKnown RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 MAP10Q9P2G4 905 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ACSL6Q9UKU0 697 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PTPRZ1P23471 2315 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 GRIN3BO60391 1043 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 MT-ND4LP03901 98 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms