RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SSX7Q7RTT5 188 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 B3GNT7Q8NFL0 401 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 GLYATL1Q969I3 302 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 FAM46BQ96A09 425 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 QRSL1Q9H0R6 528 aaKnown RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 DNAJC27Q9NZQ0 273 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 GRHPRQ9UBQ7 328 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NDRG3Q9UGV2 375 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 COQ4Q9Y3A0 265 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 OR6C75A6NL08 312 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SCDO00767 359 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 VTNP04004 478 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NFYAP23511 347 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NKX2-5P52952 324 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NUDT6P53370 316 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 TAF1CQ15572 869 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 PUS10Q3MIT2 529 aaKnown RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ZMIZ2Q8NF64 920 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 OR2S2Q9NQN1 319 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 RLIMQ9NVW2 624 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 FBXL3Q9UKT7 428 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 C2CD4BA6NLJ0 364 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NPIPA5E9PKD4 350 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 E2F3O00716 465 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 GOT2P00505 430 aaKnown RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF286BP0CG31 522 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 PRSS3P35030 304 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SLC6A9P48067 706 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 OR5T1Q8NG75 326 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 C22orf15Q8WYQ4 148 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 FOXRED1Q96CU9 486 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SEC22CQ9BRL7 303 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SACM1LQ9NTJ5 587 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NPIPA1Q9UND3 350 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 KIF13BQ9NQT8 1826 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 IL1R1P14778 569 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 PTPRAP18433 802 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ECI1P42126 302 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SF1Q15637 639 aaKnown RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 DPY19L4Q7Z388 723 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 MITD1Q8WV92 249 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 NSMAFQ92636 917 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 RSPRY1Q96DX4 576 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 TMEM106CQ9BVX2 250 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 KHNYNO15037 678 aaKnown RBP12.4□□□□□ -0.43
COL6A3-206ENST00000409809 ADRB1P08588 477 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 CTHP32929 405 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 TUSC3Q13454 348 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 LRRC37A5PQ49AS3 106 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 UNQ6126/PRO20091Q6UXV3 157 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 FRZBQ92765 325 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 SLAMF7Q9NQ25 335 aa12.4□□□□□ -0.43
COL6A3-206ENST00000409809 WASH4PA8MWX3 477 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 FKTNO75072 461 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 ECI2O75521 394 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 OR5H2Q8NGV7 314 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SUN3Q8TAQ9 357 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 FNDC9Q8TBE3 224 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 DCUN1D4Q92564 292 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 MFSD3Q96ES6 412 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 PKP4Q99569 1192 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 PRKAB1Q9Y478 270 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF736B4DX44 427 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 TAS2R39P59534 338 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 H3F3AP84243 136 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 GSTM4Q03013 218 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 TLE4Q04727 773 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 EIF2B1Q14232 305 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SLC51BQ86UW2 128 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 ZFP82Q8N141 532 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 FAM83FQ8NEG4 500 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 NR0B1P51843 470 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RAB40BQ12829 278 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 PLAG1Q6DJT9 500 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RBMS3Q6XE24 437 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SGPP2Q8IWX5 399 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 KCNRGQ8N5I3 272 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 J3KR12 359 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 GAPDHSO14556 408 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 TMEM63AO94886 807 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 AK1P00568 194 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 CXCR1P25024 350 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 CCKBRP32239 447 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 CDH8P55286 799 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 DUSP7Q16829 419 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SLC36A3Q495N2 470 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 LINGO4Q6UY18 593 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 Q6ZNX1 250 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 LDB1Q86U70 411 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 METTL21AQ8WXB1 218 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 DDX4Q9NQI0 724 aaKnown RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 RNF181Q9P0P0 153 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 PCDHGA2Q9Y5H1 932 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 FADS1O60427 444 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 BCAS1O75363 584 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-206ENST00000409809 NMBRP28336 390 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 HLA-FP30511 346 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 C1QTNF8P60827 252 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 SLC39A12Q504Y0 691 aa12.39□□□□□ -0.43
COL6A3-206ENST00000409809 FAM171A1Q5VUB5 890 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms