RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 OR52N2Q8NGI0 321 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 OR9A2Q8NGT5 310 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 METTL2AQ96IZ6 378 aaKnown RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 METTL7AQ9H8H3 244 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 CLK4Q9HAZ1 481 aaKnown RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 CMTM6Q9NX76 183 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 SPHK1Q9NYA1 384 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 NFKBIL1Q9UBC1 381 aaPredicted RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 ZFR2Q9UPR6 939 aaKnown RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 LIPT1Q9Y234 373 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 HYKKA2RU49 373 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 GREM1O60565 184 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 CLEC12AQ5QGZ9 265 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 METTL4Q8N3J2 472 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 C19orf47Q8N9M1 422 aaKnown RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 MYDGFQ969H8 173 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 ABTB1Q969K4 478 aaPredicted RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 TMEM19Q96HH6 336 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 MCHR1Q99705 422 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 CRB3Q9BUF7 120 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 TEX101Q9BY14 249 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 ALOXE3Q9BYJ1 711 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 OR52A5Q9H2C5 316 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 TUBB1Q9H4B7 451 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 AMBNQ9NP70 447 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 MYNNQ9NPC7 610 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 MKKSQ9NPJ1 570 aaPredicted RBP8.64□□□□□ -1.03
LIG4-202ENST00000405925 PCDHGA4Q9Y5G9 962 aa8.64□□□□□ -1.03
LIG4-202ENST00000405925 FAM186AA6NE01 2351 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 TSPAN11A1L157 253 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 ENO4A6NNW6 628 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 XKRYO14609 159 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 CASRP41180 1078 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 ITGA1P56199 1179 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 C14orf28Q4W4Y0 310 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 FAM91A1Q658Y4 838 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 CARM1Q86X55 608 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SLC34A3Q8N130 599 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 NAGSQ8N159 534 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 OR4K17Q8NGC6 315 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SLC25A36Q96CQ1 311 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 GABRG3Q99928 467 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 KLHL1Q9NR64 748 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 TOR4AQ9NXH8 423 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 TVP23BQ9NYZ1 205 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 WDR37Q9Y2I8 494 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 CAPN14A8MX76 684 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 ANHXE9PGG2 379 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 FOXE1O00358 373 aaPredicted RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 B3GALT4O96024 378 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 FPR1P21462 350 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 KIR2DL1P43626 348 aaPredicted RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 ERV3-1Q14264 604 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 MED22Q15528 200 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 TAF13Q15543 124 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SMAD2Q15796 467 aaKnown RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 SPATS1Q496A3 300 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 PIGGQ5H8A4 983 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 MSANTD1Q6ZTZ1 278 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 AHSA2Q719I0 299 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 OR52E4Q8NGH9 312 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 ADAMTS18Q8TE60 1221 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 TRAPPC9Q96Q05 1148 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 CMKLR1Q99788 373 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 MS4A8Q9BY19 250 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SLC24A3Q9HC58 644 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 RAB26Q9ULW5 256 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SRPK3Q9UPE1 567 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 PCDHGA7Q9Y5G6 932 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 ARID1BQ8NFD5 2236 aaPredicted RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 ANTXRLA6NF34 631 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 RIIAD1A6NNX1 92 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 YY2O15391 372 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SCO2O43819 266 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SRPX2O60687 465 aaPredicted RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 SORBS2O94875 1100 aaKnown RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 RPLP0P05388 317 aaKnown RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 CXCR1P25024 350 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 CAPGP40121 348 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 CDK9P50750 372 aaKnown RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 LSM3P62310 102 aaKnown RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 RPS15P62841 145 aaKnown RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIG4-202ENST00000405925 ST3GAL3Q11203 375 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 BBS10Q8TAM1 723 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 EZH1Q92800 747 aaPredicted RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 IFT27Q9BW83 186 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 ZBTB20Q9HC78 741 aaPredicted RBP8.63□□□□□ -1.03
LIG4-202ENST00000405925 FGF21Q9NSA1 209 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 SLAMF8Q9P0V8 285 aa8.63□□□□□ -1.03
LIG4-202ENST00000405925 HCRTR2O43614 444 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 ZNF821O75541 412 aaPredicted RBP8.62□□□□□ -1.03
LIG4-202ENST00000405925 CSTAP01040 98 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 HMGN2P05204 90 aaKnown RBP8.62□□□□□ -1.03
LIG4-202ENST00000405925 HSD17B1P14061 328 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 OTX2P32243 289 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 OR1D5P58170 312 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 REEP5Q00765 189 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 PLCXD2Q0VAA5 305 aa8.62□□□□□ -1.03
LIG4-202ENST00000405925 VTCN1Q7Z7D3 282 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms