RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SEC16BQ96JE7 1060 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF354BQ96LW1 612 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 RILPQ96NA2 401 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 FRMD6Q96NE9 622 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 KCNA7Q96RP8 456 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 EFCAB11Q9BUY7 163 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 TMEM120AQ9BXJ8 343 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ELOVL6Q9H5J4 265 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 PELI2Q9HAT8 420 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ANKHQ9HCJ1 492 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 PRM3Q9NNZ6 103 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 MMP25Q9NPA2 562 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ARL2BPQ9Y2Y0 163 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 RNF11Q9Y3C5 154 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 TIMM22Q9Y584 194 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 DNAJC15Q9Y5T4 150 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 KLF2Q9Y5W3 355 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 GTF3C1Q12789 2109 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 F8P00451 2351 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 A0A1B0GTL3 188 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 C4orf51C9J302 202 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 NPIPA5E9PKD4 350 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 H0YIV9 168 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 DIAPH2O60879 1101 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 ULK1O75385 1050 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SKAP2O75563 359 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 GRK3P35626 688 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 CASP2P42575 452 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 IDH3AP50213 366 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 NR0B1P51843 470 aaKnown RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 FOXA1P55317 472 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SLC26A5P58743 744 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 KRTAP10-9P60411 292 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 BTG2P78543 158 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 PHEXP78562 749 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 BTKQ06187 659 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SF3A3Q12874 501 aaKnown RBP eCLIP9.66□□□□□ -0.864e-7■■■□□ 16.8
NEDD8-202ENST00000396828 IFT88Q13099 833 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 DOC2AQ14183 400 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 ABRAXAS2Q15018 415 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 NSDHLQ15738 373 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 CPSF6Q16630 551 aaKnown RBP eCLIP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 MEP1AQ16819 746 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 UGT3A2Q3SY77 523 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 DEFB134Q4QY38 66 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 CATSPEREQ5SY80 951 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 C10orf62Q5T681 223 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 MED27Q6P2C8 311 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 EPGNQ6UW88 154 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 BNC2Q6ZN30 1099 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SLCO4C1Q6ZQN7 724 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 GALNTL5Q7Z4T8 443 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 FGD2Q7Z6J4 655 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SIAH3Q8IW03 269 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 TBC1D19Q8N5T2 526 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 MFSD9Q8NBP5 474 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 CAMKVQ8NCB2 501 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 PLPP5Q8NEB5 264 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 OR4K1Q8NGD4 311 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 M1APQ8TC57 530 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 C10orf82Q8WW14 230 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 STON2Q8WXE9 905 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 WDR34Q96EX3 536 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 GPR137Q96N19 417 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 AIF1LQ9BQI0 150 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 NUF2Q9BZD4 464 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 TRIM8Q9BZR9 551 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 AICDAQ9GZX7 198 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 CDCP1Q9H5V8 836 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 TNFRSF12AQ9NP84 129 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SUCOQ9UBS9 1254 aaKnown RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 C19orf25Q9UFG5 118 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-202ENST00000396828 TEKT2Q9UIF3 430 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF225Q9UK10 706 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 NPIPA1Q9UND3 350 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF835Q9Y2P0 537 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 PCDHGA11Q9Y5H2 935 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 SLC22A7Q9Y694 548 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 CACNA1CQ13936 2221 aa9.66□□□□□ -0.86
NEDD8-202ENST00000396828 ASPDHA6ND91 283 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 GABRR3A8MPY1 467 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 SLC28A1O00337 649 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 MANBAO00462 879 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF195O14628 629 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 PIP5K1BO14986 540 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 NDUFS4O43181 175 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 CHST10O43529 356 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 OR1F1O43749 312 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 GALR3O60755 368 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 B4GALT2O60909 372 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 DCTN3O75935 186 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 FHP07954 510 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF888P0CJ79 500 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 SERPINB3P29508 390 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 KIR3DL1P43629 444 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ALDH6A1Q02252 535 aaKnown RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 ACTN3Q08043 901 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-202ENST00000396828 HYAL2Q12891 473 aa9.65□□□□□ -0.86
NEDD8-202ENST00000396828 E2F2Q14209 437 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms