RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 PCBD2Q9H0N5 130 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 RMI1Q9H9A7 625 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 HMG20AQ9NP66 347 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 CORO2BQ9UQ03 480 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 B3GNT3Q9Y2A9 372 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SNX5Q9Y5X3 404 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 A8MU76 341 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 FAM227AF5H4B4 570 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 OXSR1O95747 527 aaPredicted RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 HTR1AP08908 422 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 JUNBP17275 347 aaPredicted RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 IL1RNP18510 177 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 FEN1P39748 380 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 CLK3P49761 638 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 RPS3AP61247 264 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 ISL1P61371 349 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SLAMF1Q13291 335 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 C6orf141Q5SZD1 244 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 C10orf62Q5T681 223 aaPredicted RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 LAIR1Q6GTX8 287 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 PAGE2Q7Z2X7 111 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SLC7A5P1Q8MH63 180 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SLC44A3Q8N4M1 653 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 OR2L8Q8NGY9 312 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 MSLNLQ96KJ4 702 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 CNDP2Q96KP4 475 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 KCNC2Q96PR1 638 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 RSPO3Q9BXY4 272 aaPredicted RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 KRT84Q9NSB2 600 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 PAK1IP1Q9NWT1 392 aaPredicted RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 USE1Q9NZ43 259 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 ATG4BQ9Y4P1 393 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SLCO1B1Q9Y6L6 691 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 GPR89AB7ZAQ6 455 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 GPR89BP0CG08 455 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 FPR1P21462 350 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 GSTM2P28161 218 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 GPC1P35052 558 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 DSTNP60981 165 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SPIBQ01892 262 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 HYAL2Q12891 473 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 TUBA3CQ13748 450 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SKIV2LQ15477 1246 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 SLC16A12Q6ZSM3 486 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SLC38A5Q8WUX1 472 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 MAPRE3Q9UPY8 281 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 FANCMQ8IYD8 2048 aa11.77□□□□□ -0.52
RNF4-201ENST00000314289 DMDP11532 3685 aa11.77□□□□□ -0.52
RNF4-201ENST00000314289 ANHXE9PGG2 379 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 M0R129 80 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 C9P02748 559 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 CELA2BP08218 269 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 PCSK2P16519 638 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 GABRG2P18507 467 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 GRK3P35626 688 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 RPL3P39023 403 aaKnown RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 HNRNPFP52597 415 aaKnown RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 ITGA1P56199 1179 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 IFITM3Q01628 133 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 DUSP2Q05923 314 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 TEAD4Q15561 434 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 CCDC85BQ15834 202 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 TOR1AIP1Q5JTV8 583 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 C6orf120Q7Z4R8 191 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 WDR53Q7Z5U6 358 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 AMIGO1Q86WK6 493 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 CCDC116Q8IYX3 515 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 FAM160A2Q8N612 972 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 DEFB119Q8N690 84 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 TTC29Q8NA56 475 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 OR9Q2Q8NGE9 314 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 RLN3Q8WXF3 142 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 FEVQ99581 238 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 WFDC6Q9BQY6 131 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 MROQ9BYG7 248 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 C6orf106Q9H6K1 298 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 GPR19Q15760 415 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 TMEM236Q5W0B7 351 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 KDM4DQ6B0I6 523 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 IKBIPQ70UQ0 350 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 TMEFF1Q8IYR6 380 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 VANGL1Q8TAA9 524 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 XAGE5Q8WWM1 108 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 FKBP10Q96AY3 582 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 MS4A6EQ96DS6 147 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 AMBNQ9NP70 447 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 SIRT3Q9NTG7 399 aaPredicted RBP11.77□□□□□ -0.53
RNF4-201ENST00000314289 TRPC4Q9UBN4 977 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 GMPPBQ9Y5P6 360 aa11.77□□□□□ -0.53
RNF4-201ENST00000314289 CFAP54Q96N23 3096 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 TNFRSF11BO00300 401 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 SEMA3DO95025 777 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 VIPP01282 170 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 MAGP20916 626 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 UQCRC2P22695 453 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 NCBP2P52298 156 aaKnown RBP eCLIP11.76□□□□□ -0.535e-11■■■□□ 14.7
RNF4-201ENST00000314289 EEF1A2Q05639 463 aaKnown RBP11.76□□□□□ -0.53
RNF4-201ENST00000314289 INAQ16352 499 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 TJAP1Q5JTD0 557 aa11.76□□□□□ -0.53
RNF4-201ENST00000314289 RBM48Q5RL73 367 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms