RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 C16orf78Q8WTQ4 265 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 TWIST2Q8WVJ9 160 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 TLCD1Q96CP7 247 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 SENP5Q96HI0 755 aaPredicted RBP11.21□□□□□ -0.62
SCFD1-201ENST00000311943 SORT1Q99523 831 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 CENPKQ9BS16 269 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 PSD3Q9NYI0 1048 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 PPT2Q9UMR5 302 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 ERVK-19Q9WJR5 959 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 TRAF6Q9Y4K3 522 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 CLCA3PQ9Y6N3 262 aa11.21□□□□□ -0.62
SCFD1-201ENST00000311943 CROCCQ5TZA2 2017 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 GNG14A0A1W2PPG7 69 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 GABRR3A8MPY1 467 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ERLIN1O75477 346 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 LRATO95237 230 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 GPR75O95800 540 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ENO1P06733 434 aaKnown RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 MYZAPP0CAP1 466 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 RFC3P40938 356 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 IGLV3-21P80748 117 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 DUSP8Q13202 625 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 MRPL49Q13405 166 aaKnown RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 TUBA3CQ13748 450 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ZNF267Q14586 743 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 INPP5JQ15735 1006 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 GALNTL6Q49A17 601 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 CRB2Q5IJ48 1285 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 TUBA3EQ6PEY2 450 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 C9orf40Q8IXQ3 194 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 DDIASQ8IXT1 998 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ZADH2Q8N4Q0 377 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 MYRIPQ8NFW9 859 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 EXOSC8Q96B26 276 aaKnown RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ROGDIQ9GZN7 287 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 TSPAN10Q9H1Z9 355 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 CLK4Q9HAZ1 481 aaKnown RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ADAP2Q9NPF8 381 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 SLAMF7Q9NQ25 335 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 PNPOQ9NVS9 261 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 ZNF446Q9NWS9 450 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 MRPS33Q9Y291 106 aaKnown RBP11.2□□□□□ -0.62
SCFD1-201ENST00000311943 PCDHA9Q9Y5H5 950 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 EML6Q6ZMW3 1958 aa11.2□□□□□ -0.62
SCFD1-201ENST00000311943 G3V3Y1 287 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 PEX11AO75192 247 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 OR2J2O76002 312 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TUBBP07437 444 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ANXA4P09525 319 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 UROSP10746 265 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TIA1P31483 386 aaKnown RBP eCLIP11.19□□□□□ -0.624e-8■■□□□ 11.9
SCFD1-201ENST00000311943 HPDP32754 393 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 BUD31P41223 144 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TSFMP43897 325 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 STT3AP46977 705 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TNFSF10P50591 281 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 XKP51811 444 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ACSM2AQ08AH3 577 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 CSTF3Q12996 717 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 EXOSC7Q15024 291 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ELAVL1Q15717 326 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 NNATQ16517 81 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 IMPG1Q17R60 797 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TRMT12Q53H54 448 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ABHD17BQ5VST6 288 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 IRAK1BP1Q5VVH5 260 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ACSM2BQ68CK6 577 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TRIM46Q7Z4K8 759 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 RPS19BP1Q86WX3 136 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 DGAT2Q96PD7 388 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 LMF1Q96S06 567 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 C1orf50Q9BV19 199 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ILKAPQ9H0C8 392 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 PHF11Q9UIL8 331 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 TCP11X1B4DZS4 312 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 NPHS1O60500 1241 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 DPM1O60762 260 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 SEC22BO75396 215 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ITGA10O75578 1167 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 NEURL1O76050 574 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ALOX15P16050 662 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 RPL38P63173 70 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 OC90Q02509 493 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 BST1Q10588 318 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 PDCD2Q16342 344 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 EXT1Q16394 746 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 SLC48A1Q6P1K1 146 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 CCDC116Q8IYX3 515 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 CPT1CQ8TCG5 803 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 PNPLA2Q96AD5 504 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 DEFB126Q9BYW3 111 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 EPS8L2Q9H6S3 715 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 LYARQ9NX58 379 aaKnown RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 MARCOQ9UEW3 520 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-201ENST00000311943 ANAPC2Q9UJX6 822 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 FLNCQ14315 2725 aa11.19□□□□□ -0.62
SCFD1-201ENST00000311943 A0A0G2JMM0 328 aa11.18□□□□□ -0.62
SCFD1-201ENST00000311943 A0A1W2PPB8 328 aa11.18□□□□□ -0.62
SCFD1-201ENST00000311943 A0A1W2PRS3 328 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms