RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KLHL20Q9Y2M5 609 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 GPSM3Q9Y4H4 160 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 CDK1P06493 297 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 OR12D1P0DN82 309 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 POU1F1P28069 291 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 IGFALSP35858 605 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 LBX1P52954 281 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 ITGADQ13349 1161 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 ENPP2Q13822 863 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 SEC23BQ15437 767 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 DEF8Q6ZN54 512 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 LACC1Q8IV20 430 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 RAB42Q8N4Z0 105 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 BTBD2Q9BX70 525 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 PBX4Q9BYU1 374 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 GLIPR2Q9H4G4 154 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 SYNPO2LQ9H987 977 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 SLC6A20Q9NP91 592 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 KCND3Q9UK17 655 aa19.02■□□□□ 0.63
VPS53-201ENST00000291074 SLC28A2O43868 658 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 PKLRP30613 574 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 SERPINB1P30740 379 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 CSNK2BP67870 215 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 SGCGQ13326 291 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 AGERQ15109 404 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 ZNF750Q32MQ0 723 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 ZNF770Q6IQ21 691 aaPredicted RBP19.01■□□□□ 0.63
VPS53-201ENST00000291074 COMTD1Q86VU5 262 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 FBXL6Q8N531 539 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 LGALS12Q96DT0 336 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 COL21A1Q96P44 957 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 BTBD1Q9H0C5 482 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 FKBP14Q9NWM8 211 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 WBP11Q9Y2W2 641 aaKnown RBP19.01■□□□□ 0.63
VPS53-201ENST00000291074 SCN3AQ9NY46 2000 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 EPOPA6NHQ4 379 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 HAT1O14929 419 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 CLEC3AO75596 197 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 IGFBP1P08833 259 aaPredicted RBP19.01■□□□□ 0.63
VPS53-201ENST00000291074 CHMP24386 653 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 GPC1P35052 558 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 TCTN3Q6NUS6 607 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 SNX29P2Q8IUI4 249 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 OR8K5Q8NH50 307 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 OR51I1Q9H343 314 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 SPHK1Q9NYA1 384 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 FTSJ1Q9UET6 329 aa19.01■□□□□ 0.63
VPS53-201ENST00000291074 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.01■□□□□ 0.63
VPS53-201ENST00000291074 CLDN25C9JDP6 229 aa19■□□□□ 0.63
VPS53-201ENST00000291074 RFXAPO00287 272 aa19■□□□□ 0.63
VPS53-201ENST00000291074 TBCEQ15813 527 aaPredicted RBP19■□□□□ 0.63
VPS53-201ENST00000291074 COLEC12Q5KU26 742 aa19■□□□□ 0.63
VPS53-201ENST00000291074 DCDC5Q6ZRR9 648 aa19■□□□□ 0.63
VPS53-201ENST00000291074 DEPDC4Q8N2C3 294 aa19■□□□□ 0.63
VPS53-201ENST00000291074 CENPSQ8N2Z9 138 aa19■□□□□ 0.63
VPS53-201ENST00000291074 XAGE5Q8WWM1 108 aa19■□□□□ 0.63
VPS53-201ENST00000291074 MYDGFQ969H8 173 aa19■□□□□ 0.63
VPS53-201ENST00000291074 AMDHD1Q96NU7 426 aa19■□□□□ 0.63
VPS53-201ENST00000291074 TREX2Q9BQ50 279 aaPredicted RBP19■□□□□ 0.63
VPS53-201ENST00000291074 YIPF4Q9BSR8 244 aa19■□□□□ 0.63
VPS53-201ENST00000291074 KCNK12Q9HB15 430 aa19■□□□□ 0.63
VPS53-201ENST00000291074 AKIP1Q9NQ31 210 aa19■□□□□ 0.63
VPS53-201ENST00000291074 MS4A12Q9NXJ0 267 aa19■□□□□ 0.63
VPS53-201ENST00000291074 SCHIP1Q9P0W5 487 aaPredicted RBP19■□□□□ 0.63
VPS53-201ENST00000291074 TRPC4Q9UBN4 977 aa19■□□□□ 0.63
VPS53-201ENST00000291074 A0A1W2PS29 197 aa19■□□□□ 0.63
VPS53-201ENST00000291074 A8MVJ9 347 aa19■□□□□ 0.63
VPS53-201ENST00000291074 GPR89AB7ZAQ6 455 aa19■□□□□ 0.63
VPS53-201ENST00000291074 SOX14O95416 240 aa19■□□□□ 0.63
VPS53-201ENST00000291074 ADRA2AP08913 450 aa19■□□□□ 0.63
VPS53-201ENST00000291074 GPR89BP0CG08 455 aa19■□□□□ 0.63
VPS53-201ENST00000291074 EIF2DP41214 584 aaKnown RBP19■□□□□ 0.63
VPS53-201ENST00000291074 TIGD6Q17RP2 521 aa19■□□□□ 0.63
VPS53-201ENST00000291074 MLIPQ5VWP3 458 aa19■□□□□ 0.63
VPS53-201ENST00000291074 SYCE2Q6PIF2 218 aa19■□□□□ 0.63
VPS53-201ENST00000291074 ADCK1Q86TW2 530 aa19■□□□□ 0.63
VPS53-201ENST00000291074 SLC38A4Q969I6 547 aa19■□□□□ 0.63
VPS53-201ENST00000291074 SLC35G5Q96KT7 338 aa19■□□□□ 0.63
VPS53-201ENST00000291074 TIMM29Q9BSF4 260 aa19■□□□□ 0.63
VPS53-201ENST00000291074 C1QTNF2Q9BXJ5 285 aa19■□□□□ 0.63
VPS53-201ENST00000291074 MRPS30Q9NP92 439 aaKnown RBP19■□□□□ 0.63
VPS53-201ENST00000291074 C11orf16Q9NQ32 467 aa19■□□□□ 0.63
VPS53-201ENST00000291074 SPTBN5Q9NRC6 3674 aaKnown RBP19■□□□□ 0.63
VPS53-201ENST00000291074 EFCAB9A8MZ26 197 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ERI3O43414 337 aaKnown RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 ERAL1O75616 437 aaKnown RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 PTHP01270 115 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 PEBP1P30086 187 aaKnown RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 CNR2P34972 360 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 CRISP3P54108 245 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 PRKAG1P54619 331 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 RPS21P63220 83 aaKnown RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 DUSP2Q05923 314 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ST3GAL4Q11206 333 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 HYAL2Q12891 473 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 GPR19Q15760 415 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 DGUOKQ16854 277 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ITPRIPL2Q3MIP1 535 aa18.99■□□□□ 0.63
VPS53-201ENST00000291074 ZNF776Q68DI1 518 aaPredicted RBP18.99■□□□□ 0.63
VPS53-201ENST00000291074 DENND6BQ8NEG7 585 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms