RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PDE7BQ9NP56 450 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 PRODH2Q9UF12 536 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 IRS2Q9Y4H2 1338 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 I3L521 148 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 EMC8O43402 210 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 OR2B3O76000 313 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 YES1P07947 543 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 C22orf42Q6IC83 251 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF783Q6ZMS7 281 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF551Q7Z340 670 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 CEACAM19Q7Z692 300 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZSCAN4Q8NAM6 433 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 PEX11GQ96HA9 241 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 SLC5A7Q9GZV3 580 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 EXOSC1Q9Y3B2 195 aaKnown RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 PCDHGA2Q9Y5H1 932 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ANHXE9PGG2 379 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 NPIPA2E9PIF3 369 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 NPIPA3F8WFD2 350 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 GSRP00390 522 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 H2BFMP0C1H6 154 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 NR2C1P13056 603 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 HERV-K104P61576 105 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 EIF5AP63241 154 aaKnown RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 MAB21L1Q13394 359 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 C6orf141Q5SZD1 244 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 NLGN4YQ8NFZ3 816 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 SMARCD2Q92925 531 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF471Q9BX82 626 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 LINC00597Q9H2U6 94 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF701Q9NV72 531 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 E7ESA3 106 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF623O75123 536 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 GLP1RP43220 463 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 MOGSQ13724 837 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF789Q5FWF6 425 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 NXPE4Q6UWF7 544 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 LRRC25Q8N386 305 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 DENND6BQ8NEG7 585 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF689Q96CS4 500 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 SCGB3A2Q96PL1 93 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 SPATA6Q9NWH7 488 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 ZNF226Q9NYT6 803 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 MYO10Q9HD67 2058 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 UNC119BA6NIH7 251 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 IFNA7P01567 189 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 MPC1LP0DKB6 136 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 MAPK3P27361 379 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 RAB7BQ96AH8 199 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 ARHGAP9Q9BRR9 750 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 CXXC1Q9P0U4 656 aaPredicted RBP10.97□□□□□ -0.65
USP53-201ENST00000274030 FTSJ1Q9UET6 329 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 CLEC4EQ9ULY5 219 aa10.97□□□□□ -0.65
USP53-201ENST00000274030 EEF1E1O43324 174 aaKnown RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 BPNT1O95861 308 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 MT-ND2P03891 347 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 FBLP22087 321 aaKnown RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 MAGEA2P43356 314 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 ZNF252P-AS1Q0IIN9 211 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 SLC6A7Q99884 636 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 CCM2LQ9NUG4 571 aaPredicted RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 ASB6Q9NWX5 421 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 NUAK1O60285 661 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 SPINT3P49223 89 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 TAS2R43P59537 309 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 HTRA3P83110 453 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 TUBA3CQ13748 450 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 PON2Q15165 354 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 CST6Q15828 149 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 MOGQ16653 247 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 RNF111Q6ZNA4 994 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 SHFQ7M4L6 423 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 KLBQ86Z14 1044 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 SLC44A3Q8N4M1 653 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 THAP4Q8WY91 577 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 FIZ1Q96SL8 496 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 ATG5Q9H1Y0 275 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 MRPL15Q9P015 296 aaKnown RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 SEC14L4Q9UDX3 406 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 HMGB3O15347 200 aaKnown RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 PVALBP20472 110 aaPredicted RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 FDXRP22570 491 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 HMGCLP35914 325 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 SHC2P98077 582 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 FAM69BQ5VUD6 431 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 G6PC3Q9BUM1 346 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 ZNF717Q9BY31 904 aaPredicted RBP10.96□□□□□ -0.65
USP53-201ENST00000274030 SFXN1Q9H9B4 322 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 EPHA6Q9UF33 1036 aa10.96□□□□□ -0.65
USP53-201ENST00000274030 KCPQ6ZWJ8 1503 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 CITO14578 2027 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 SEC14L5O43304 696 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 SLC16A8O95907 504 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 ZNF865P0CJ78 1059 aaPredicted RBP10.96□□□□□ -0.66
USP53-201ENST00000274030 GTF2F2P13984 249 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 PRKCAP17252 672 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 HTR1EP28566 365 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 PLP2Q04941 152 aa10.96□□□□□ -0.66
USP53-201ENST00000274030 RUNX3Q13761 415 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms