RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CILP2Q8IUL8 1156 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 NPAS4Q8IUM7 802 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 FAM109AQ8N4B1 249 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 TEX26Q8N6G2 289 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ACBD7Q8N6N7 88 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 B3GNT7Q8NFL0 401 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 RPF2Q9H7B2 306 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ZCCHC3Q9NUD5 404 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 GFOD1Q9NXC2 390 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 EPHA6Q9UF33 1036 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 UTS2RQ9UKP6 389 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 TOPAZ1Q8N9V7 1692 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 VSTM2BA6NLU5 285 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 MMP12P39900 470 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ERVK-16P61578 105 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 CDK6Q00534 326 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 RPA4Q13156 261 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 PAN2Q504Q3 1202 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 WDR45BQ5MNZ6 344 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 HES5Q5TA89 166 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 PNCKQ6P2M8 343 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ERN2Q76MJ5 926 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 OTOP3Q7RTS5 596 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 NLRP8Q86W28 1048 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 LMF2Q9BU23 707 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 RNF121Q9H920 327 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 RXFP3Q9NSD7 469 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 MED17Q9NVC6 651 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 CNOT6Q9ULM6 557 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 PCYT1BQ9Y5K3 369 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 TEX264Q9Y6I9 313 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ANKRD66B4E2M5 251 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ALDOBP05062 364 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 HTR1EP28566 365 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 FOXN2P32314 431 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 CTNNB1P35222 781 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ARSFP54793 590 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 HSPB3Q12988 150 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 SCGB2B2Q4G0G5 96 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 C9orf131Q5VYM1 1079 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 CADM2Q8N3J6 435 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ZFAND1Q8TCF1 268 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 ADAMTS16Q8TE57 1224 aa5.85□□□□□ -1.47
VPS13D-201ENST00000011700 EXOSC8Q96B26 276 aaKnown RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 MAFBQ9Y5Q3 323 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-201ENST00000011700 LOC102725191A0A1B0GVB3 256 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 MDFIC2A0A1B0GVS7 189 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 TPD52L2O43399 206 aaKnown RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SYNGR4O95473 234 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 EDNRAP25101 427 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 CLRN1P58418 232 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 MINDY4Q4G0A6 757 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 KIAA0895LQ68EN5 471 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SYNPOQ8N3V7 929 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 HAS1Q92839 578 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SCRN2Q96FV2 425 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 MEAF6Q9HAF1 191 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 FAM212BQ9NTI7 297 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SCML2Q9UQR0 700 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 BHMG1C9JSJ3 638 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF821O75541 412 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 CREG1O75629 220 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 EGFP01133 1207 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 PRPH2P23942 346 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 NFYBP25208 207 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 ARRB1P49407 418 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 S100A10P60903 97 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 ELAVL3Q14576 367 aaKnown RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 KDELC1Q6UW63 502 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 LARP4Q71RC2 724 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 OR4K14Q8NGD5 310 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 C10orf82Q8WW14 230 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 CPT1BQ92523 772 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 RNF38Q9H0F5 515 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 IL17RBQ9NRM6 502 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 VAPAQ9P0L0 249 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 ERVK-19Q9WJR5 959 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 CACNA1HO95180 2353 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 NEDD8-MDP1E9PL57 170 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 F5H0A9 414 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 TLL1O43897 1013 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 PIGRP01833 764 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 HEXAP06865 529 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SNHG28P0DPA3 235 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 TAP2Q03519 686 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SLC18A2Q05940 514 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 GPR153Q6NV75 609 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 RASGRP3Q8IV61 690 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 SGPP2Q8IWX5 399 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 CLIP3Q96DZ5 547 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 TSGA13Q96PP4 275 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 ALPK1Q96QP1 1244 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 FUNDC2Q9BWH2 189 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 COQ10BQ9H8M1 238 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 ATF5Q9Y2D1 282 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 FXYD6-FXYD2A0A087WZ82 144 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 PIP5K1CO60331 668 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 HTR3BO95264 441 aa5.84□□□□□ -1.47
VPS13D-201ENST00000011700 DBIP07108 87 aaKnown RBP5.84□□□□□ -1.47
VPS13D-201ENST00000011700 RPS21P63220 83 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms