RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NR1D1P20393 614 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 TIA1P31483 386 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-239ENST00000628023 PPP2R2AP63151 447 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 ID2Q02363 134 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 RAPSNQ13702 412 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 HSP90B2PQ58FF3 399 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 PAPD4Q6PIY7 484 aaKnown RBP16.95■□□□□ 0.3
CLN3-239ENST00000628023 GALNT16Q8N428 558 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 ZNF781Q8N8C0 355 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 CDC26Q8NHZ8 85 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 RAB3IL1Q8TBN0 382 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 TANKQ92844 425 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 FAIM2Q9BWQ8 316 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 MANSC1Q9H8J5 431 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 LRTM1Q9HBL6 345 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 PFDN4Q9NQP4 134 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 PNO1Q9NRX1 252 aaKnown RBP16.95■□□□□ 0.3
CLN3-239ENST00000628023 TEX10Q9NXF1 929 aaPredicted RBP16.95■□□□□ 0.3
CLN3-239ENST00000628023 A0A1W2PQ72 361 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 A0A1W2PR48 441 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 GLOD5A6NK44 160 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 A8MUA0 341 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 SEC22BO75396 215 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 ALDH9A1P49189 494 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 AP2B1P63010 937 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 SERTAD2Q14140 314 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 PDCD2Q16342 344 aaPredicted RBP16.94■□□□□ 0.3
CLN3-239ENST00000628023 BTBD16Q32M84 506 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 GALNTL6Q49A17 601 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 NDUFAF5Q5TEU4 345 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 OR52E8Q6IFG1 317 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 RNF165Q6ZSG1 346 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 KBTBD2Q8IY47 623 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 THOC3Q96J01 351 aaKnown RBP16.94■□□□□ 0.3
CLN3-239ENST00000628023 SLC25A23Q9BV35 468 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 TUBB1Q9H4B7 451 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 THAP1Q9NVV9 213 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 C1orf109Q9NX04 203 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 GPR83Q9NYM4 423 aa16.94■□□□□ 0.3
CLN3-239ENST00000628023 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.94■□□□□ 0.3
CLN3-239ENST00000628023 POLR3HQ9Y535 204 aaPredicted RBP16.94■□□□□ 0.3
CLN3-239ENST00000628023 MYOCOSA0A1B0GUC4 107 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 ANXA4P09525 319 aaPredicted RBP16.93■□□□□ 0.3
CLN3-239ENST00000628023 ICAM2P13598 275 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 RPL14P50914 215 aaKnown RBP16.93■□□□□ 0.3
CLN3-239ENST00000628023 PGDP52209 483 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 TRA2BP62995 288 aaKnown RBP16.93■□□□□ 0.3
CLN3-239ENST00000628023 RPL38P63173 70 aaKnown RBP16.93■□□□□ 0.3
CLN3-239ENST00000628023 RAE1P78406 368 aaKnown RBP16.93■□□□□ 0.3
CLN3-239ENST00000628023 FOLH1Q04609 750 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 EXT1Q16394 746 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 UGT3A2Q3SY77 523 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 OR4N5Q8IXE1 308 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 OR2T11Q8NH01 316 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 C19orf60Q96EN9 201 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 DGAT2Q96PD7 388 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 SORT1Q99523 831 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 CCT7Q99832 543 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 ALOXE3Q9BYJ1 711 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 C20orf27Q9GZN8 174 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 LHPPQ9H008 270 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 INTS9Q9NV88 658 aaKnown RBP16.93■□□□□ 0.3
CLN3-239ENST00000628023 LRRK2Q5S007 2527 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 COL12A1Q99715 3063 aa16.93■□□□□ 0.3
CLN3-239ENST00000628023 SAGE2PA6NJ88 616 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 TGFBR3LH3BV60 316 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 K7EM74 188 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 FGF17O60258 216 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 KLHL41O60662 606 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 ALPPP05187 535 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 COX7A2P14406 83 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 TNNI3P19429 210 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 PRPH2P23942 346 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 TAS2R50P59544 299 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 PLIN5Q00G26 463 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 ZNF763Q0D2J5 394 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 FAM26EQ8N5C1 309 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 C7orf57Q8NEG2 295 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 FDCSPQ8NFU4 85 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 FAM76AQ8TAV0 307 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 LRRC8CQ8TDW0 803 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 MIB2Q96AX9 1013 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 ANKRD9Q96BM1 317 aaPredicted RBP16.92■□□□□ 0.3
CLN3-239ENST00000628023 TM4SF18Q96CE8 201 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 PPP1R36Q96LQ0 422 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 PPP3R2Q96LZ3 170 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 WDR77Q9BQA1 342 aaPredicted RBP16.92■□□□□ 0.3
CLN3-239ENST00000628023 ADAP2Q9NPF8 381 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 PCDHGA9Q9Y5G4 932 aaKnown RBP16.92■□□□□ 0.3
CLN3-239ENST00000628023 MED13Q9UHV7 2174 aa16.92■□□□□ 0.3
CLN3-239ENST00000628023 RP1L1Q8IWN7 2480 aaPredicted RBP16.92■□□□□ 0.3
CLN3-239ENST00000628023 C1orf226A1L170 272 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 TTLL8A6PVC2 850 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 OR10H2O60403 315 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 VPS4BO75351 444 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 SERPINA7P05543 415 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 CELA2AP08217 269 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 IL3P08700 152 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 PRR35P0CG20 571 aa16.91■□□□□ 0.3
CLN3-239ENST00000628023 PIK3R1P27986 724 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms