RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FOLH1Q04609 750 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SERTAD2Q14140 314 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 NR6A1Q15406 480 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 BTBD16Q32M84 506 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 XKR7Q5GH72 579 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 OR52E8Q6IFG1 317 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 TCTN3Q6NUS6 607 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 RIPOR1Q6ZS17 1223 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 C9orf43Q8TAL5 461 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 FAM76AQ8TAV0 307 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 DNAJB14Q8TBM8 379 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 LHPPQ9H008 270 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 ZNF552Q9H707 407 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 LRTM1Q9HBL6 345 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 ADAP2Q9NPF8 381 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 PNO1Q9NRX1 252 aaKnown RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 THAP1Q9NVV9 213 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 PCDHA9Q9Y5H5 950 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 C1orf226A1L170 272 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SAGE2PA6NJ88 616 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 A8MUA0 341 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 K7EM74 188 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 LSM1O15116 133 aaKnown RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SKAP2O75563 359 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 GPR75O95800 540 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 ANXA4P09525 319 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC26A5P58743 744 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 TAS2R50P59544 299 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 TERF2Q15554 542 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 ELAVL1Q15717 326 aaKnown RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 EXT1Q16394 746 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 ATG16L1Q676U5 607 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 NOXRED1Q6NXP6 359 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 KIRREL3Q8IZU9 778 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 MMP21Q8N119 569 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 NFAM1Q8NET5 270 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 C16orf78Q8WTQ4 265 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 PSMF1Q92530 271 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 C3orf30Q96M34 536 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 CCT7Q99832 543 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SEMA4CQ9C0C4 833 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 G3BP2Q9UN86 482 aaKnown RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 DLGAP4Q9Y2H0 992 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 POLR3HQ9Y535 204 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 TLN1Q9Y490 2541 aaKnown RBP15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 ATP6AP2A0A1C7CYW4 349 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 KLF11O14901 512 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 ATP6AP2O75787 350 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 MYO1DO94832 1006 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 PDGFAP04085 211 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 IFNA16P05015 189 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 JUNP05412 331 aaKnown RBP15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 IL3P08700 152 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 ITGAMP11215 1152 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 ZNF763Q0D2J5 394 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 BIKQ13323 160 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 RFTN2Q52LD8 501 aaPredicted RBP15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 IRAK1BP1Q5VVH5 260 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC48A1Q6P1K1 146 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 C7orf57Q8NEG2 295 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 M1APQ8TC57 530 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC39A7Q92504 469 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 ZNF75CPQ92670 426 aaPredicted RBP15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 C19orf60Q96EN9 201 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 FCRL1Q96LA6 429 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 SMAD5Q99717 465 aaKnown RBP15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 FAIM2Q9BWQ8 316 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC25A18Q9H1K4 315 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 MMP25Q9NPA2 562 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 PNPOQ9NVS9 261 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 HEY2Q9UBP5 337 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 CES1P1Q9UKY3 287 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 TP53TG5Q9Y2B4 290 aa15.47■□□□□ 0.07
CCDC28A-202ENST00000611852 NR1D1P20393 614 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 GSTM5P46439 218 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 STT3AP46977 705 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PGDP52209 483 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 AP2B1P63010 937 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 OCRLQ01968 901 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PDCD2Q16342 344 aaPredicted RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 GALNTL6Q49A17 601 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 SOWAHCQ53LP3 525 aaPredicted RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 VWA5B1Q5TIE3 1220 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 JMJD6Q6NYC1 403 aaPredicted RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 BRIX1Q8TDN6 353 aaKnown RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PTPMT1Q8WUK0 201 aaPredicted RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PPP3R2Q96LZ3 170 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PFDN4Q9NQP4 134 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 ZNF71Q9NQZ8 489 aaPredicted RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 C5AR2Q9P296 337 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 PPIEQ9UNP9 301 aaKnown RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 TMED5Q9Y3A6 229 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 CLCA3PQ9Y6N3 262 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 TNRC6AQ8NDV7 1962 aaKnown RBP15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 BOD1L1Q8NFC6 3051 aa15.46■□□□□ 0.07
CCDC28A-202ENST00000611852 KLHL41O60662 606 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 DRD2P14416 443 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 ALOX15P16050 662 aaPredicted RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 PIK3R1P27986 724 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms