RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SLC35C2Q9NQQ7 365 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 ATAD3AQ9NVI7 634 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 CCDC167Q9P0B6 97 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 SH3BP4Q9P0V3 963 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 UTS2RQ9UKP6 389 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 PADI2Q9Y2J8 665 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 CLDN16Q9Y5I7 305 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 CAPN7Q9Y6W3 813 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 SPTBN2O15020 2390 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 DYTNA2CJ06 578 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 SYNDIG1LA6NDD5 238 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 IDSB3KWA1 339 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 FGF17O60258 216 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 RECKO95980 971 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 IL6P05231 212 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 LAMP1P11279 417 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 PIK3R1P27986 724 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 KIR3DL1P43629 444 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 POLR2JP52435 117 aaKnown RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 RPS15P62841 145 aaKnown RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 BTG2P78543 158 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 IGLV3-21P80748 117 aaPredicted RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 FOLH1Q04609 750 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 SLC13A2Q13183 592 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 DNASE1L3Q13609 305 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 SERTAD2Q14140 314 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 RCAN2Q14206 197 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 CEBPEQ15744 281 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 PRSS53Q2L4Q9 553 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 FAM174BQ3ZCQ3 159 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 MINDY4Q4G0A6 757 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 ZNF385BQ569K4 471 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 SPANXN4Q5MJ08 99 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 MFSD4BQ5TF39 518 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 ANKRD26P1Q6NSI1 321 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 BLOC1S3Q6QNY0 202 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 LAPTM4BQ86VI4 370 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 ENDOVQ8N8Q3 282 aaKnown RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 OR4K14Q8NGD5 310 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 OR2Y1Q8NGV0 311 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 TSPEARQ8WU66 669 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 NUDT8Q8WV74 236 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 EXOSC8Q96B26 276 aaKnown RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 KLHL29Q96CT2 875 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 ZNF681Q96N22 645 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 PTCHD1Q96NR3 888 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 SOX17Q9H6I2 414 aaPredicted RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 GIMAP4Q9NUV9 329 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 ARMCX1Q9P291 453 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 C5AR2Q9P296 337 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 CROTQ9UKG9 612 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 MKL2Q9ULH7 1088 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 FARSAQ9Y285 508 aaKnown RBP13.48□□□□□ -0.25
UPF1-211ENST00000600868 PCDHGA6Q9Y5G7 932 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 ZNF780BQ9Y6R6 833 aa13.48□□□□□ -0.25
UPF1-211ENST00000600868 IGKV3D-11A0A0A0MRZ8 115 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 LOC101059948A0A1B0GTJ6 334 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 LDB3O75112 727 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 ERAL1O75616 437 aaKnown RBP13.47□□□□□ -0.25
UPF1-211ENST00000600868 PGRP06401 933 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 HEXBP07686 556 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 CSNK2A2P19784 350 aaPredicted RBP13.47□□□□□ -0.25
UPF1-211ENST00000600868 PTPN4P29074 926 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 S100A3P33764 101 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 DLSTP36957 453 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 FRKP42685 505 aaPredicted RBP13.47□□□□□ -0.25
UPF1-211ENST00000600868 XKP51811 444 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 EFNA3P52797 238 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 EMP2P54851 167 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 WNT3P56703 355 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 PCBP4P57723 403 aaKnown RBP13.47□□□□□ -0.25
UPF1-211ENST00000600868 KCNK10P57789 538 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 MPEG1Q2M385 716 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 PGS1Q32NB8 556 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 FAM91A1Q658Y4 838 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 MSANTD1Q6ZTZ1 278 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 OR4N5Q8IXE1 308 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 PRSS58Q8IYP2 241 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 IL22RA1Q8N6P7 574 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 FGF11Q92914 225 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 CNRIP1Q96F85 164 aaPredicted RBP13.47□□□□□ -0.25
UPF1-211ENST00000600868 DUSP26Q9BV47 211 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 SLC52A3Q9NQ40 469 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 NECTIN3Q9NQS3 549 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 DKK4Q9UBT3 224 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 C3orf18Q9UK00 162 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 KCND3Q9UK17 655 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 TCFL5Q9UL49 500 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 ENTPD4Q9Y227 616 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 PTRH2Q9Y3E5 179 aaKnown RBP13.47□□□□□ -0.25
UPF1-211ENST00000600868 SCN2AQ99250 2005 aa13.47□□□□□ -0.25
UPF1-211ENST00000600868 AHCTF1Q8WYP5 2266 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CROCCQ5TZA2 2017 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 TCRBV16S1A1N1A0A5B0 115 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 OR2W5A6NFC9 320 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CAPN14A8MX76 684 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 MYO1GB0I1T2 1018 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 C9JVG2 144 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 TGFBR3LH3BV60 316 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 NR5A2O00482 541 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms