RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MCM8Q9UJA3 840 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 EXO1Q9UQ84 846 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 MRPS33Q9Y291 106 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 PCDHA9Q9Y5H5 950 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 CSAG2Q9Y5P2 127 aa13.28□□□□□ -0.28
SHKBP1-217ENST00000598558 UQCRHLA0A096LP55 91 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 SAGE2PA6NJ88 616 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 TMEM114B3SHH9 223 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 NPIPB8E9PQR5 432 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 HRKO00198 91 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PCDH7O60245 1069 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PRKNO60260 465 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 MYO1DO94832 1006 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 HSPA4LO95757 839 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 GPR75O95800 540 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 UQCRHP07919 91 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 NR2F6P10588 404 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 TACR1P25103 407 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 TIA1P31483 386 aaKnown RBP eCLIP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 SOX18P35713 384 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 BUD31P41223 144 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 SLC1A6P48664 564 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PGDP52209 483 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 TAS2R50P59544 299 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 ACSM2AQ08AH3 577 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 STX4Q12846 297 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 STX3Q13277 289 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 RFTN2Q52LD8 501 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 VWA5B1Q5TIE3 1220 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 ACSM2BQ68CK6 577 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 H3F3CQ6NXT2 135 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 FAM180BQ6P0A1 224 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 IGFL2Q6UWQ7 119 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 RBMXL3Q8N7X1 1067 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 APCDD1LQ8NCL9 501 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PPP1R14CQ8TAE6 165 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 VPS50Q96JG6 964 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 MMP25Q9NPA2 562 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PNPOQ9NVS9 261 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PLA2G3Q9NZ20 509 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 PPIEQ9UNP9 301 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 DLGAP4Q9Y2H0 992 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 POLR3HQ9Y535 204 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 SPACA6W5XKT8 324 aa13.27□□□□□ -0.29
SHKBP1-217ENST00000598558 A8MUI8 341 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 SLC28A1O00337 649 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 LSM1O15116 133 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 SEC22BO75396 215 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 RSL1D1O76021 490 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 DDAH2O95865 285 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 IFNA16P05015 189 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 IL3P08700 152 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 ANXA4P09525 319 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 SFTPCP11686 197 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 PRPH2P23942 346 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 TLX1P31314 330 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 PTGER1P34995 402 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 EXT1Q16394 746 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 IMPG1Q17R60 797 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 NADK2Q4G0N4 442 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 SPIN4Q56A73 249 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 XKR7Q5GH72 579 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 NUP210LQ5VU65 1888 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 NOXRED1Q6NXP6 359 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 LINC00696Q6ZRV3 163 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 SREK1Q8WXA9 508 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 EGLN2Q96KS0 407 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 FCRL1Q96LA6 429 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 MFRPQ9BY79 579 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 LRTM1Q9HBL6 345 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 ADAP2Q9NPF8 381 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 HAO1Q9UJM8 370 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 BSNQ9UPA5 3926 aa13.26□□□□□ -0.29
SHKBP1-217ENST00000598558 ATP6AP2A0A1C7CYW4 349 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 BLACEA4D250 179 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 TMEM200CA6NKL6 621 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 SNNO75324 88 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 SKAP2O75563 359 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 ATP6AP2O75787 350 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 F10P00742 488 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 ICAM2P13598 275 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 ALOX15P16050 662 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 GRK2P25098 689 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 STT3AP46977 705 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 TRA2BP62995 288 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 SERTAD2Q14140 314 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 ELAVL1Q15717 326 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 AGAP7PQ5VUJ5 663 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 FAM71E1Q6IPT2 247 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 SLC48A1Q6P1K1 146 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 C16orf47Q6ZP98 133 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 CRLF3Q8IUI8 442 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 DDIASQ8IXT1 998 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 CATSPER1Q8NEC5 780 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 B3GNT7Q8NFL0 401 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 NUDT8Q8WV74 236 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 NCLNQ969V3 563 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 ZNF681Q96N22 645 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 AGAP4Q96P64 663 aa13.25□□□□□ -0.29
SHKBP1-217ENST00000598558 KCNK13Q9HB14 408 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms