RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 NDUFAF5Q5TEU4 345 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 B3GNTL1Q67FW5 361 aaPredicted RBP14.04□□□□□ -0.16
UPF1-202ENST00000594243 ACSM2BQ68CK6 577 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 SLC6A19Q695T7 634 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 OR52E8Q6IFG1 317 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 SCIMPQ6UWF3 145 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 Q6ZS92 163 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 OR4N5Q8IXE1 308 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 CLYBLQ8N0X4 340 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 AMER2Q8N7J2 671 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 MORN4Q8NDC4 146 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 OR14A16Q8NHC5 309 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 PPP1R14CQ8TAE6 165 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 VMP1Q96GC9 406 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 PELOQ9BRX2 385 aaKnown RBP14.04□□□□□ -0.16
UPF1-202ENST00000594243 ILKAPQ9H0C8 392 aaPredicted RBP14.04□□□□□ -0.16
UPF1-202ENST00000594243 SIRT5Q9NXA8 310 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 MCM8Q9UJA3 840 aa14.04□□□□□ -0.16
UPF1-202ENST00000594243 MYOCOSA0A1B0GUC4 107 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 GLOD5A6NK44 160 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 TTLL8A6PVC2 850 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 SLC28A1O00337 649 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 PRKRAO75569 313 aaKnown RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 ALOX15P16050 662 aaPredicted RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 PIK3R1P27986 724 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 GSTM5P46439 218 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 CD97P48960 835 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 PLIN5Q00G26 463 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 ID2Q02363 134 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 BTKQ06187 659 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 TLR1Q15399 786 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 PLEKHN1Q494U1 663 aaPredicted RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 ACER2Q5QJU3 275 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 FAM219BQ5XKK7 198 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 CLEC6AQ6EIG7 209 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 RNF165Q6ZSG1 346 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 ZCCHC23Q6ZST2 131 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 RPS19BP1Q86WX3 136 aaKnown RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 ST13P4Q8IZP2 240 aaPredicted RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 LGI4Q8N135 537 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 APCDD1LQ8NCL9 501 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 PTPMT1Q8WUK0 201 aaPredicted RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 TM4SF18Q96CE8 201 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 APIPQ96GX9 242 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 METTL2AQ96IZ6 378 aaKnown RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 PKNOX2Q96KN3 472 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 FAIM2Q9BWQ8 316 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 DEFB126Q9BYW3 111 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 RNF32Q9H0A6 362 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 CDCP1Q9H5V8 836 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 TMBIM4Q9HC24 238 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 TNFRSF12AQ9NP84 129 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 TEX10Q9NXF1 929 aaPredicted RBP14.03□□□□□ -0.16
UPF1-202ENST00000594243 PSME2Q9UL46 239 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 TRAF6Q9Y4K3 522 aa14.03□□□□□ -0.16
UPF1-202ENST00000594243 SETXQ7Z333 2677 aaKnown RBP14.02□□□□□ -0.16
UPF1-202ENST00000594243 COL6A6A6NMZ7 2263 aa14.02□□□□□ -0.16
UPF1-202ENST00000594243 GNG14A0A1W2PPG7 69 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 WDR91A4D1P6 747 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 C17orf105B2RV13 164 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 PGRMC2O15173 223 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 RGS14O43566 566 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 PCDH7O60245 1069 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 RSL1D1O76021 490 aaKnown RBP14.02□□□□□ -0.17
UPF1-202ENST00000594243 CHRNGP07510 517 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 NEFHP12036 1026 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 GALNSP34059 522 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 GPR143P51810 404 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 KANK2Q63ZY3 851 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 GALNT18Q6P9A2 607 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 CRLF3Q8IUI8 442 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 OR4K14Q8NGD5 310 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 OR1N1Q8NGS0 311 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 OR6Y1Q8NGX8 325 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 SUN3Q8TAQ9 357 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 FAM76AQ8TAV0 307 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 NCLNQ969V3 563 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 ART5Q96L15 291 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 EPN3Q9H201 632 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 FIS1Q9Y3D6 152 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 PCDHA9Q9Y5H5 950 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 PIEZO2Q9H5I5 2752 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 FLNBO75369 2602 aaKnown RBP14.02□□□□□ -0.17
UPF1-202ENST00000594243 MED13Q9UHV7 2174 aa14.02□□□□□ -0.17
UPF1-202ENST00000594243 TNRC6AQ8NDV7 1962 aaKnown RBP14.02□□□□□ -0.17
UPF1-202ENST00000594243 TRBV11-1A0A0K0K1C0 115 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 OR5H15A6NDH6 313 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 WASHC1A8K0Z3 465 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 FCHO1O14526 889 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 OR10H2O60403 315 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 ZFAND5O76080 213 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 SORBS2O94875 1100 aaKnown RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 SNUPNO95149 360 aaKnown RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 WDPCPO95876 746 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 ANXA4P09525 319 aaPredicted RBP14.01□□□□□ -0.17
UPF1-202ENST00000594243 DHRS4L1P0CG22 281 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 SLC35E2P0CK97 266 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 DRD2P14416 443 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 GRK2P25098 689 aa14.01□□□□□ -0.17
UPF1-202ENST00000594243 TIA1P31483 386 aaKnown RBP eCLIP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms