RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 DCCP43146 1447 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 NKX6-3A6NJ46 265 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 SRRM5B3KS81 715 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 BOLA2-SMG1P6H3BVE0 249 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 MLNRO43193 412 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 MOCS2O96007 188 aaPredicted RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 ZNF853P0CG23 659 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 CLCN4P51793 760 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 NDST2P52849 883 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 AKAP17AQ02040 695 aaKnown RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 DMTNQ08495 405 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 ZNF239Q16600 458 aaKnown RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 SPOUT1Q5T280 376 aaKnown RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 CAVIN1Q6NZI2 390 aaKnown RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 KDELC1Q6UW63 502 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 CCDC91Q7Z6B0 441 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 GLRX5Q86SX6 157 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 SLC47A2Q86VL8 602 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 UNC45BQ8IWX7 931 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 THNSL1Q8IYQ7 743 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 DND1Q8IYX4 353 aaKnown RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 TEX26Q8N6G2 289 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 GRK7Q8WTQ7 553 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 IL12RB2Q99665 862 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 ZNF577Q9BSK1 485 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 RAB11FIP5Q9BXF6 653 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 UBQLN3Q9H347 655 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 TUBB1Q9H4B7 451 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 GRPEL1Q9HAV7 217 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 GPN1Q9HCN4 374 aaPredicted RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 C6orf203Q9P0P8 240 aaPredicted RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 FBXL5Q9UKA1 691 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 MRPS18CQ9Y3D5 142 aaKnown RBP4.24□□□□□ -1.73
NUP88-213ENST00000576862 RTL1A6NKG5 1358 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 KDRP35968 1356 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 KIF24Q5T7B8 1368 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 NALCNQ8IZF0 1738 aa4.24□□□□□ -1.73
NUP88-213ENST00000576862 NFAT5O94916 1531 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 ARHGEF37A1IGU5 675 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 SELENOFO60613 162 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 E2F6O75461 281 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 PALMO75781 387 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 GOSR1O95249 250 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 POP4O95707 220 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 GUCA1CO95843 209 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 HPRP00739 348 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 RPLP0P05388 317 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 VIMP08670 466 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 GPR183P32249 361 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 OR3A1P47881 315 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 PGFP49763 221 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 MS4A18Q3C1V0 323 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 ALKBH5Q6P6C2 394 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 TRMT11Q7Z4G4 463 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 TBC1D21Q8IYX1 336 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 ZNF540Q8NDQ6 660 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 OR52B6Q8NGF0 335 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 SSC4DQ8WTU2 575 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 NPRL2Q8WTW4 380 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 TSSK2Q96PF2 358 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 PAPOLGQ9BWT3 736 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 NCOR1P1Q9H4R4 102 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 FNDC4Q9H6D8 234 aaPredicted RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 MINDY3Q9H8M7 445 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 FANCFQ9NPI8 374 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 AIPL1Q9NZN9 384 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 SH3BGRL2Q9UJC5 107 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 LAMP5Q9UJQ1 280 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 NOCTQ9UK39 431 aaKnown RBP4.23□□□□□ -1.73
NUP88-213ENST00000576862 SATB2Q9UPW6 733 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 TRAF3IP3Q9Y228 551 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 KIF3AQ9Y496 699 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 ZHX2Q9Y6X8 837 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 MSH6P52701 1360 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 PEAK1Q9H792 1746 aa4.23□□□□□ -1.73
NUP88-213ENST00000576862 PIK3C2AO00443 1686 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 CRB1P82279 1406 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 ANKRD26Q9UPS8 1709 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 IGLV4-3A0A075B6K6 122 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 A0A0B4J203 849 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 TRAV34A0A0B4J273 112 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 TRAFD1O14545 582 aaPredicted RBP4.22□□□□□ -1.73
NUP88-213ENST00000576862 PGRMC2O15173 223 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 TGDSO95455 350 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 SP9P0CG40 484 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 GOT1P17174 413 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 OXTRP30559 389 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 CAPGP40121 348 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 KRTAP10-3P60369 221 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 KIAA0141Q14154 515 aaPredicted RBP4.22□□□□□ -1.73
NUP88-213ENST00000576862 GRB14Q14449 540 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 ZNF146Q15072 292 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 WSCD2Q2TBF2 565 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 ANKDD1AQ495B1 522 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 DCLRE1AQ6PJP8 1040 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 PPP1R42Q7Z4L9 355 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 P2RY8Q86VZ1 359 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 METTL23Q86XA0 190 aa4.22□□□□□ -1.73
NUP88-213ENST00000576862 MEX3DQ86XN8 651 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms