RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RNF223E7ERA6 249 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 SNPHO15079 494 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 CTIFO43310 598 aaKnown RBP10.16□□□□□ -0.78
VPS53-207ENST00000570510 DYRK3O43781 588 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 CYP4B1P13584 511 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 NPPBP16860 134 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 IVDP26440 423 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 CASQ1P31415 396 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 CLCN7P51798 805 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 DR1Q01658 176 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 CRYZQ08257 329 aaKnown RBP10.16□□□□□ -0.78
VPS53-207ENST00000570510 RCN2Q14257 317 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 TOR1AIP1Q5JTV8 583 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 BTLAQ7Z6A9 289 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 STRA8Q7Z7C7 330 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 SCUBE1Q8IWY4 988 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 ZNF595Q8IYB9 648 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 PDIK1LQ8N165 341 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 LRRC25Q8N386 305 aaPredicted RBP10.16□□□□□ -0.78
VPS53-207ENST00000570510 FAM47BQ8NA70 645 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 ABHD11Q8NFV4 315 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 OR8K3Q8NH51 312 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 MBD3L2Q8NHZ7 208 aaPredicted RBP10.16□□□□□ -0.78
VPS53-207ENST00000570510 SNF8Q96H20 258 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 ZNF597Q96LX8 424 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 FAM111AQ96PZ2 611 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 FAM167BQ9BTA0 163 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 ACBD3Q9H3P7 528 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 PIGMQ9H3S5 423 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 PRM3Q9NNZ6 103 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 KLHL28Q9NXS3 571 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 CNIH4Q9P003 139 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 ASIC3Q9UHC3 531 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 ADGRE2Q9UHX3 823 aa10.16□□□□□ -0.78
VPS53-207ENST00000570510 MYOCOSA0A1B0GUC4 107 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 C17orf105B2RV13 164 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 EIF3HO15372 352 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS53-207ENST00000570510 B3GALT2O43825 422 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 C8GP07360 202 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 COX7A2P14406 83 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PGAM1P18669 254 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 MGAT1P26572 445 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 SERPINB3P29508 390 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 AHRP35869 848 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 MC3RP41968 323 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 MASP1P48740 699 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 STXBP1P61764 594 aaKnown RBP10.15□□□□□ -0.78
VPS53-207ENST00000570510 CAV1Q03135 178 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 RUNX1T1Q06455 604 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 CKAP4Q07065 602 aaKnown RBP10.15□□□□□ -0.78
VPS53-207ENST00000570510 CLEC12BQ2HXU8 276 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 LRRC8EQ6NSJ5 796 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 NEPROQ6NW34 567 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 CES3Q6UWW8 571 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 MBOAT1Q6ZNC8 495 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 CYS1Q717R9 158 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PIWIL4Q7Z3Z4 852 aaKnown RBP10.15□□□□□ -0.78
VPS53-207ENST00000570510 CILP2Q8IUL8 1156 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PPP1R14CQ8TAE6 165 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PAQR8Q8TEZ7 354 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 CCT6BQ92526 530 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 UCN3Q969E3 161 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PYCR2Q96C36 320 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 INTS12Q96CB8 462 aaKnown RBP10.15□□□□□ -0.78
VPS53-207ENST00000570510 NTNG2Q96CW9 530 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 MFSD3Q96ES6 412 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 SIGLEC10Q96LC7 697 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 ZFP3Q96NJ6 502 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 TM9SF2Q99805 663 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 ALOXE3Q9BYJ1 711 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PRDM14Q9GZV8 571 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 DDX47Q9H0S4 455 aaKnown RBP10.15□□□□□ -0.78
VPS53-207ENST00000570510 KLHL31Q9H511 634 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 PARVBQ9HBI1 364 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 SYBUQ9NX95 663 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 CORO1CQ9ULV4 474 aaPredicted RBP10.15□□□□□ -0.78
VPS53-207ENST00000570510 SLC6A5Q9Y345 797 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 TESMINQ9Y4I5 508 aa10.15□□□□□ -0.78
VPS53-207ENST00000570510 A0A0G2JN53 185 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 ZCWPW2A0A1B0GU75 182 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 TCRBV7S3A2A0A539 114 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 A8MV72 311 aaPredicted RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 WIPF1O43516 503 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SMNDC1O75940 238 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS53-207ENST00000570510 ACSL3O95573 720 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SERPINA6P08185 405 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 ARNTP27540 789 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 MSH2P43246 934 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SCTRP47872 440 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 KCNJ5P48544 419 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 RGS4P49798 205 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 RAB38P57729 211 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 EEF1A1P68104 462 aaKnown RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 THOC5Q13769 683 aaKnown RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 EFTUD2Q15029 972 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS53-207ENST00000570510 TRIP13Q15645 432 aaPredicted RBP10.14□□□□□ -0.79
VPS53-207ENST00000570510 MPEG1Q2M385 716 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 PIGGQ5H8A4 983 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 SPANXN3Q5MJ09 141 aa10.14□□□□□ -0.79
VPS53-207ENST00000570510 EEF1A1P5Q5VTE0 462 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms